Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(6)
  SAGE RsaI
(1)
  SAGE Sau3A
(2)
  MPSS
(4)
  GeneChip
(167)
  Tiling Array
(144)
  cDNA Array
(408)
  Oligo Array
(928)
  Bead Array
(63)
  Protein Array
(0)
  Antibody
(4)
  RT-PCR
(68)
  HT-Seq
(92)
  Other
(20)
  All
(1,907)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL5050 454 sequencing of small RNAs from mouse 136,417 Cold Spring Harbor Laboratory 2007-03-30 454 Mus musculus
Mus musculus
HT Sequencing other, 454 sequencing of small RNAs from mouse,
2 GPL5986 MIT/SharpLab Mouse ES cell 454 2007 78,368 MIT 2007-10-10 Mus musculus
Mus musculus
HT Sequencing other, MIT/SharpLab Mouse ES cell 454 2007, High throughput sequencing of mouse embryonic stem cell short RNAs, 16-30nt fraction. Libraries were made from J1 ES cells before and 5 days after demethylation with 5-aza-deoxycytidine, and from Dicer-conditional ES cell lines before and after deletion of Dicer's floxed region. Adaptor ligation required 5' monophosphates and 3' hyrdoxyls.
3 GPL6451 Hannon/CSHL-mouse-Illumina 1G sequencing-oocyte small RNAs 1,673,339 Cold Spring Harbor Laboratory 2008-02-01 not applicable Mus musculus
Mus musculus
HT Sequencing other, Hannon/CSHL-mouse-Illumina 1G sequencing-oocyte small RNAs, Solexa/Illumina 1G sequencing platform. Illumina Inc. San Diego, CA
4 GPL6677 Broad-Mouse-Illumina-Genome-Analyzer-RRBS 0 Broad Institute 2008-04-02 Mus musculus
Mus musculus
HT Sequencing other, Broad-Mouse-Illumina-Genome-Analyzer-RRBS, Illumina Genome Analyzer (1G), San Diego, CA
5 GPL6693 Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq 0 Broad Institute 2008-04-05 Mus musculus
Mus musculus
HT Sequencing other, Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq, Illumina Genome Analyzer (1G), San Diego, CA
6 GPL6742 Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (Meissner) 0 Broad Institute 2008-04-14 Mus musculus
Mus musculus
HT Sequencing other, Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (Meissner), Illumina Genome Analyzer (1G), San Diego, CA
7 GPL6858 GIS-Mouse-Solexa-ChIP-seq 0 Genome Institute of Singapore 2008-05-13 Mus musculus
Mus musculus
HT Sequencing other, GIS-Mouse-Solexa-ChIP-seq, Solexa sequencing
8 GPL7041 Whitehead Institute Solexa sequencing 107,743 Whitehead Institute 2008-07-10 Illumina, Inc. Mus musculus
Mus musculus
HT Sequencing other, Whitehead Institute Solexa sequencing, Sequencing was carried out using the Solexa/Illumina Genome Analyzer
9 GPL7059 Whitehead-Young-Mouse-Solexa (small RNA sequences) 6,901,774 Whitehead Institute 2008-07-16 not applicable Mus musculus
Mus musculus
HT Sequencing other, Whitehead-Young-Mouse-Solexa (small RNA sequences), Solexa sequencing Data generated at Center for Advanced Genome Technology at Whitehead Institute using Genome Analyzer manufactured by Solexa/Illumina (Sequencing by Synthesis)
10 GPL7058 Whitehead-Young-Mouse-Solexa (ChIP-seq) 0 Whitehead Institute 2008-07-16 not applicable Mus musculus
Mus musculus
HT Sequencing other, Whitehead-Young-Mouse-Solexa (ChIP-seq), Solexa sequencing Data generated at Center for Advanced Genome Technology at Whitehead Institute using Genome Analyzer manufactured by Solexa/Illumina (Sequencing by Synthesis)
11 GPL7095 Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (2007) 0 Broad Institute 2008-07-24 Mus musculus
Mus musculus
HT Sequencing other, Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (2007), Illumina Genome Analyzer (1G), San Diego, CA
12 GPL7139 NHLBI-Mouse-Solexa-Tcell-Stat 0 NHLBI/NIH 2008-08-05 Illumina GA, San Diego CA Mus musculus
Mus musculus
HT Sequencing other, NHLBI-Mouse-Solexa-Tcell-Stat,
13 GPL7195 Illumina small RNA sequencing 2,156,990 UCSF 2008-08-21 Illumina Mus musculus
Mus musculus
HT Sequencing other, Illumina small RNA sequencing, Sequencing was carried out using the 1G Illumina Genome Analyser (Solexa)
14 GPL7196 454 small RNA sequencing 55,675 UCSF 2008-08-21 454 Mus musculus
Mus musculus
HT Sequencing other, 454 small RNA sequencing, Sequencing was carried out using 454 GS
15 GPL7238 IMBA Ago-1 and TRIM32-bound small RNAs from E14.5 mouse brain (454 GS FLX system) 118,419 Hubrecht Institute 2008-09-01 Institute of molecular Biology of the Austrian Academy of Sciences (IMBA) Mus musculus
Mus musculus
HT Sequencing MPSS, IMBA Ago-1 and TRIM32-bound small RNAs from E14.5 mouse brain (454 GS FLX system),
16 GPL9185 Illumina Genome Analyzer (Mus musculus) 0 2009-09-11 Mus musculus
Mus musculus
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Mus musculus),
17 GPL9250 Illumina Genome Analyzer II (Mus musculus) 0 2009-09-21 Mus musculus
Mus musculus
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Mus musculus),
18 GPL9273 454 GS FLX (Mus musculus) 0 2009-09-23 Mus musculus
Mus musculus
HT Sequencing high-throughput sequencing, 454 GS FLX (Mus musculus),
19 GPL9318 AB SOLiD System 3.0 (Mus musculus) 0 2009-09-29 Mus musculus
Mus musculus
HT Sequencing high-throughput sequencing, AB SOLiD System 3.0 (Mus musculus),
20 GPL9412 454 GS FLX (Rattus norvegicus) 0 2009-10-08 Rattus norvegicus
Rattus norvegicus
HT Sequencing high-throughput sequencing, 454 GS FLX (Rattus norvegicus),
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