Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,625)		   Primates
(206)		   Rodents
(12,612)		   Mammals
(782)		   Vertebrates
(1,156)		   Invertebrates
(4,045)		   Plants
(6,642)		   Bacteria
(2,980)		   Viruses
(50)		   Phages
(4)		   Unclassified
(287)		   All
(47,440)		  
  SAGE NlaIII
(76)		   SAGE RsaI
(1)		   SAGE Sau3A
(10)		   MPSS
(5)		   GeneChip
(6,310)		   Tiling Array
(290)		   cDNA Array
(724)		   Oligo Array
(2,856)		   Bead Array
(929)		   Protein Array
(0)		   Antibody
(4)		   RT-PCR
(92)		   HT-Seq
(1,285)		   Other
(30)		   All
(12,612)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Analysis of TF binding sites and histone modification in IRF8-induced monocyte differentiation (GSE38824) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Yokohama City University 2012-06-20 Mus musculus
Mus musculus		 6
(0 x 6) 		6 by_platform
by_series
2 IRF8-induced monocyte differentiation (GSE38825) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Yokohama City University 2012-06-20 Mus musculus
Mus musculus		 6
(0 x 6) 		6 by_platform
by_series
3 The genomic landscape of cohesin-associated chromatin interactions (GSE42237) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Yale University School of Medicine 2012-11-13 Mus musculus
Mus musculus		 22
(0 x 22) 		9 2 11 by_platform
by_series
4 Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb. (GSE30641) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Yale University School of Medicine 2011-07-13 Mus musculus
Mus musculus		 14
(0 x 14) 		14 by_platform
by_series
5 Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb. (GSE30641) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Yale University School of Medicine 2011-07-13 Mus musculus
Mus musculus		 10
(0 x 10) 		10 by_platform
by_series
6 Transcriptome profiling of SOD1 mutant ALS model motor neurons. (GSE38820) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Yale University School of Medicine 2012-06-19 Mus musculus
Mus musculus		 4
(0 x 4) 		4 by_platform
by_series
7 Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA-sequencing (GSE30765) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Yale University 2011-07-18 Mus musculus
Mus musculus		 12
(0 x 12) 		4 8 by_platform
by_series
8 Analysis of small RNAs in piRNA pathway mutant mouse testes (GSE20327) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Yale University 2010-02-14 Mus musculus
Mus musculus		 6
(0 x 6) 		6 by_platform
by_series
9 Deep sequencing of small RNAs from Mouse brain during aging (GSE34393) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) YALE UNIVERSITY 2011-12-12 Mus musculus
Mus musculus		 2
(0 x 2) 		2 by_platform
by_series
10 Mll1 regulates the downstream gene transcription activated by TNFa (GSE36567) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Wuhan University 2012-03-16 Mus musculus
Mus musculus		 4
(0 x 4) 		4 by_platform
by_series
11 Next Gen(etics): targeted genome enrichment and next-generation sequencing enhances phenotype-driven forward genetics and gene-driven reverse genetics (GSE22024) [HT Sequencing] AB SOLiD System 3.0 (Rattus norvegicus) (GPL10462) Wilhelmina Children's Hospital, University Medical Center Utrecht 2010-05-27 Rattus norvegicus
Rattus norvegicus		 30
(0 x 30) 		30 by_platform
by_series
12 SetDB1 Contributes to Repression of Genes Encoding Developmental Regulators and Maintenance of ES Cell State (GSE18371) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) Whitehead Instute - MIT 2009-10-01 Mus musculus
Mus musculus		 11
(0 x 11) 		11 by_platform
by_series
13 Global analyses of how 3' UTR-isoform choice influences mRNA stability and translational efficiency (GSE44698) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Whitehead Institute/MIT 2013-02-26 Mus musculus
Mus musculus		 12
(0 x 12) 		12 by_platform
by_series
14 Global analyses of how 3' UTR-isoform choice influences mRNA stability and translational efficiency (GSE44698) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute/MIT 2013-02-26 Mus musculus
Mus musculus		 2
(0 x 2) 		1 1 by_platform
by_series
15 RNA-Seq analysis of microRNA expression profiles in mouse primary CFU-E late erythroid progenitors and Ter119+ mature erythroblasts (GSE25602) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute for Biomedical Research and MIT Department of Biology 2010-11-24 Mus musculus
Mus musculus		 2
(0 x 2) 		2 by_platform
by_series
16 Cell-Type-Specific TGF-beta Signaling is Targeted to Genes that Control Cell Identity: ChIP-Seq (GSE21614) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute for Biomedical Research 2010-04-30 Mus musculus
Mus musculus		 18
(0 x 18) 		5 5 8 by_platform
by_series
17 Control of Embryonic Stem Cell State by Mediator and Cohesin (GSE22557) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute for Biomedical Research 2010-06-24 Mus musculus
Mus musculus		 17
(0 x 17) 		6 11 by_platform
by_series
18 Control of Embryonic Stem Cell State by Mediator and Cohesin (Illumina ChIP-Seq data) (GSE22562) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute for Biomedical Research 2010-06-24 Mus musculus
Mus musculus		 17
(0 x 17) 		6 11 by_platform
by_series
19 Enhancer Decommissioning by LSD1 During Embryonic Stem Cell Differentiation (ChIP-seq) (GSE27841) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute for Biomedical Research 2011-03-08 Mus musculus
Mus musculus		 16
(0 x 16) 		16 by_platform
by_series
20 Enhancer Decommissioning by LSD1 During Embryonic Stem Cell Differentiation (GSE27844) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute for Biomedical Research 2011-03-08 Mus musculus
Mus musculus		 16
(0 x 16) 		16 by_platform
by_series
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