Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(10,907)
  Primates
(161)
  Rodents
(4,382)
  Mammals
(440)
  Vertebrates
(308)
  Invertebrates
(851)
  Plants
(4,190)
  Bacteria
(913)
  Viruses
(22)
  Phages
(0)
  Unclassified
(195)
  All
(22,372)
 
  SAGE NlaIII
(5)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(2,369)
  Tiling Array
(97)
  cDNA Array
(192)
  Oligo Array
(1,538)
  Bead Array
(130)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(51)
  Other
(0)
  All
(4,382)
 
  brain
(12)
  blood
(6)
  connective
(4)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(1)
  lung
(1)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(20)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(7)
  all
(51)
 
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM278892 Sox1_RRBS_MspI 0 Broad Institute 2008-04-02 [HT Sequencing] Broad-Mouse-Illumina-Genome-Analyzer-RRBS (GPL6677) genomic Mus musculus
Mus musculus
unclassified source_name:Sox1+ progenitor cells (ES-derived) title:Sox1_RRBS_MspI description:Bisulfite treated, MspI digestion
2 GSM279934 MCV6_H3K4me3_ChIPSeq 0 Broad Institute 2008-04-05 [HT Sequencing] Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (GPL6693) genomic Mus musculus
Mus musculus
unclassified source_name:MEF-derived cell line MCV6 title:MCV6_H3K4me3_ChIPSeq description:Antibody: H3K4me3 (Abcam ab8580)
3 GSM279935 MCV6_H3K27me3_ChIPSeq 0 Broad Institute 2008-04-05 [HT Sequencing] Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (GPL6693) genomic Mus musculus
Mus musculus
unclassified source_name:MEF-derived cell line MCV6 title:MCV6_H3K27me3_ChIPSeq description:Antibody: H3K27me3 (Upstate 07-449)
4 GSM279938 MCV8_H3K4me3_ChIPSeq 0 Broad Institute 2008-04-05 [HT Sequencing] Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (GPL6693) genomic Mus musculus
Mus musculus
unclassified source_name:MEF-derived cell line MCV8 title:MCV8_H3K4me3_ChIPSeq description:Antibody: H3K4me3 (Abcam ab8580)
5 GSM279939 MCV8_H3K27me3_ChIPSeq 0 Broad Institute 2008-04-05 [HT Sequencing] Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (GPL6693) genomic Mus musculus
Mus musculus
unclassified source_name:MEF-derived cell line MCV8 title:MCV8_H3K27me3_ChIPSeq description:Antibody: H3K27me3 (Upstate 07-449)
6 GSM279942 MCV81_H3K4me3_ChIPSeq 0 Broad Institute 2008-04-05 [HT Sequencing] Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (GPL6693) genomic Mus musculus
Mus musculus
unclassified source_name:MEF-derived iPS cell line MCV8.1 title:MCV81_H3K4me3_ChIPSeq description:Antibody: H3K4me3 (Abcam ab8580)
7 GSM279943 MCV81_H3K27me3_ChIPSeq 0 Broad Institute 2008-04-05 [HT Sequencing] Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq (GPL6693) genomic Mus musculus
Mus musculus
unclassified source_name:MEF-derived iPS cell line MCV8.1 title:MCV81_H3K27me3_ChIPSeq description:Antibody: H3K27me3 (Upstate 07-449)