Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(718)		   SAGE RsaI
(3)		   SAGE Sau3A
(37)		   MPSS
(100)		   GeneChip
(89,973)		   Tiling Array
(2,000)		   cDNA Array
(11,116)		   Oligo Array
(53,181)		   Bead Array
(13,914)		   Protein Array
(0)		   Antibody
(22)		   RT-PCR
(885)		   HT-Seq
(8,762)		   Other
(395)		   All
(181,106)		  
  brain
(26)		   blood
(6)		   connective
(10)		   reproductive
(6)		   muscular
(6)		   digestive
(7)		   liver
(6)		   lung
(2)		   urinary
(3)		   endo/exo-crine
(7)		   embryo
(3)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(12)		   unclassified
(6)		   all
(100)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM44337 Brain:Olfactory Bulb, Male (MoBr.MaOB) 15,914 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Olfactory Bulb, Male total RNA
2 GSM80479 Mouse Brain - medulla (MoMe.Male) 15,519 Solexa 2005-10-27 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 brain stem Mouse Brain - medulla total RNA
3 GSM32353 Brain:Thalamus, Female (MoBr.FeTh) 15,285 Solexa 2004-10-14 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Thalamus, Female total RNA
4 GSM47339 Brain:Cerebellum, Female (MoBr.FeCb) 15,026 Solexa 2005-04-04 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebellum Brain:Cerebellum, Female total RNA
5 GSM35333 Spinal cord:entire, Female (MoSC.FeEn) 14,931 Solexa 2004-11-15 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 spine Spinal cord:entire, Female total RNA
6 GSM32355 Brain:Hippocampus, Male (MoBr.MaHi) 14,190 Solexa 2004-10-14 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Hippocampus, Male total RNA
7 GSM44334 Brain:Cortical mantle, Female (MoBr.FeCM) 13,992 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Cortical mantle, Female total RNA
8 GSM32354 Brain:Cerebellum, Male (MoBr.MaCb) 13,988 Solexa 2004-10-14 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebellum Brain:Cerebellum, Male total RNA
9 GSM44336 Brain:Cortical mantle, Male (MoBr.MaCM) 13,412 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Cortical mantle, Male total RNA
10 GSM34299 Ovary, Female (MoOv.Feml) 13,365 Solexa 2004-11-01 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 ovary Ovary, Female total RNA
11 GSM38493 Eye, Female (MoEy.Feml) 13,365 Solexa 2005-01-05 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 eye Eye, Female total RNA
12 GSM44331 Brain:Caudate,Putamen,Accumbens,BasalForebrain, Female (MoBr.FCPA) 13,196 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Caudate,Putamen,Accumbens,BasalForebrain, Female total RNA
13 GSM36605 Brain:Caudate,Putamen,Accumbens,BasalForebrain, Male (MoBr.MCPA) 13,104 Solexa 2004-11-30 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Caudate,Putamen,Accumbens,BasalForebrain, Male total RNA
14 GSM32356 Brain:Midbrain, Male (MoBr.MaMb) 12,846 Solexa 2004-10-14 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Midbrain, Male total RNA
15 GSM17241 BLK.CL4 (MoBC.31Nc) 12,762 Solexa 2004-02-26 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 unclassified source_name:BLK.CL4 total RNA title:BLK.CL4 (MoBC.31Nc) description:Strain: C57BL6 BLK.CL4 total RNA (MoBC.31Nc) received from National Human Genome Research Institute was analyzed through Bioanalyzer and passed our quality control test. The mRNA was processed according to the MPSS protocol as outlined in the previous publications (Brenner, S., et al. (2000) Proc Natl Acad Sci U S A 97(4): 1665-1670 and Brenner, S. et al., Nat. Biotechnol 18(6): 630-634). Briefly, the mRNA was reverse transcribed and the cDNA was digested with Dpn II. The 20 bases adjacent to the 3? most Dpn II site was cloned into a Megaclone vector. The resulting library was amplified and loaded onto microbeads. About 1.6 million microbeads were loaded into each flow cell and the signature sequences were determined by a series of enzymatic reactions as outlined in the above publications. The abundance for each signature was converted to transcripts per million (tpm) for the purpose of comparisons between samples. Cells/tissue: Library MoBC.31Nc.sig21 Cell type BLK.CL4 Source NHGRI RNA isolation LYNX mRNA QC passed cDNA library: Library DpnII restriction - (signature cloning using MmeI) Sequence length 20 bp MPSS: runs MoBC.31Nc_sig21.4792W.d-20 12/17/2003 485122 18365 MoBC.31Nc_sig21.4792W.c-20 12/16/2003 540475 19063 MoBC.31Nc_sig21.4792T.b-20 12/11/2003 614438 20298 MoBC.31Nc_sig21.4792T.a-20 12/11/2003 544180 20436 Run group: Total Beads successfully sequenced - 2184215 Processed Signatures - 23657 Transcripts 3'-most (Canonical) Signatures - 12762 Lot batch =
16 GSM38497 Spinal cord:entire, Male (MoSC.MaEn) 12,669 Solexa 2005-01-05 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 spine Spinal cord:entire, Male total RNA
17 GSM44335 Brain:Midbrain, Female (MoBr.FeMb) 12,656 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Midbrain, Female total RNA
18 GSM27138 Bladder, Male (MoBl.Male) 12,577 Solexa 2004-07-20 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 bladder Bladder, Male total RNA
19 GSM87831 Mouse ES cells (MoES.R1xx) 12,562 Solexa 2005-12-14 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 embryo Mouse ES cells total RNA
20 GSM47340 Brain:Hippocampus, Female (MoBr.FeHi) 12,507 Solexa 2005-04-04 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Hippocampus, Female total RNA
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