Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(718)		   SAGE RsaI
(3)		   SAGE Sau3A
(37)		   MPSS
(100)		   GeneChip
(89,973)		   Tiling Array
(2,000)		   cDNA Array
(11,116)		   Oligo Array
(53,181)		   Bead Array
(13,914)		   Protein Array
(0)		   Antibody
(22)		   RT-PCR
(885)		   HT-Seq
(8,762)		   Other
(395)		   All
(181,106)		  
  brain
(26)		   blood
(6)		   connective
(10)		   reproductive
(6)		   muscular
(6)		   digestive
(7)		   liver
(6)		   lung
(2)		   urinary
(3)		   endo/exo-crine
(7)		   embryo
(3)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(12)		   unclassified
(6)		   all
(100)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM146224 MPSS-MRP1-20bp 50,727 Harvard Medical School 2006-11-18 [MPSS] MPSS 20bp [DpnII: Mus musculus] signature list (GPL4571) MPSS Mus musculus
Mus musculus		 retina Adult mouse retina pool 1
2 GSM146225 MPSS-MRP2-20bp 50,727 Harvard Medical School 2006-11-18 [MPSS] MPSS 20bp [DpnII: Mus musculus] signature list (GPL4571) MPSS Mus musculus
Mus musculus		 retina Adult mouse retina pool 2
3 GSM146222 MPSS-MRP1-17bp 47,450 Harvard Medical School 2006-11-18 [MPSS] MPSS 17bp [DpnII: Mus musculus] signature list (GPL4572) MPSS Mus musculus
Mus musculus		 retina Adult mouse retina pool 1
4 GSM146223 MPSS-MRP2-17bp 47,450 Harvard Medical School 2006-11-18 [MPSS] MPSS 17bp [DpnII: Mus musculus] signature list (GPL4572) MPSS Mus musculus
Mus musculus		 retina Adult mouse retina pool 2
5 GSM112131 MoCR mouse organ of Corti MPSS signature library 22,169 National Institute on Deafness and Other Communication Disorders (NIDCD) 2006-06-01 [MPSS] MPSS inner ear signature list (GPL3835) MPSS Mus musculus
Mus musculus		 unclassified source_name:organ of Corti tissue title:MoCR mouse organ of Corti MPSS signature library description:Mouse vestibular tissue total RNA (MoVb.B16x) received from NIDCD was analyzed through Bioanalyzer and passed our quality control test. The mRNA was processed according to the MPSS protocol as outlined in the previous publications (Brenner, S., et al. (2000) Proc Natl Acad Sci U S A 97(4): 1665-1670 and Brenner, S. et al., Nat. Biotechnol 18(6): 630-634). Briefly, the mRNA was reverse transcribed and the cDNA was digested with Dpn II. The 20 bases adjacent to the 3? most Dpn II site was cloned into a Megaclone vector. The resulting library was amplified and loaded onto microbeads. About 1.6 million microbeads were loaded into each flow cell and the signature sequences were determined by a series of enzymatic reactions as outlined in the above publications. The abundance for each signature was converted to transcripts per million (tpm) for the purpose of comparisons between samples.
6 GSM112132 MoSV stria vascularis MPSS library 19,743 National Institute on Deafness and Other Communication Disorders (NIDCD) 2006-06-01 [MPSS] MPSS inner ear signature list (GPL3835) MPSS Mus musculus
Mus musculus		 unclassified source_name:mouse stria vascularis title:MoSV stria vascularis MPSS library description:Mouse vestibular tissue total RNA (MoVb.B16x) received from NIDCD was analyzed through Bioanalyzer and passed our quality control test. The mRNA was processed according to the MPSS protocol as outlined in the previous publications (Brenner, S., et al. (2000) Proc Natl Acad Sci U S A 97(4): 1665-1670 and Brenner, S. et al., Nat. Biotechnol 18(6): 630-634). Briefly, the mRNA was reverse transcribed and the cDNA was digested with Dpn II. The 20 bases adjacent to the 3? most Dpn II site was cloned into a Megaclone vector. The resulting library was amplified and loaded onto microbeads. About 1.6 million microbeads were loaded into each flow cell and the signature sequences were determined by a series of enzymatic reactions as outlined in the above publications. The abundance for each signature was converted to transcripts per million (tpm) for the purpose of comparisons between samples.
7 GSM44337 Brain:Olfactory Bulb, Male (MoBr.MaOB) 15,914 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Olfactory Bulb, Male total RNA
8 GSM80479 Mouse Brain - medulla (MoMe.Male) 15,519 Solexa 2005-10-27 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 brain stem Mouse Brain - medulla total RNA
9 GSM32353 Brain:Thalamus, Female (MoBr.FeTh) 15,285 Solexa 2004-10-14 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Thalamus, Female total RNA
10 GSM47339 Brain:Cerebellum, Female (MoBr.FeCb) 15,026 Solexa 2005-04-04 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebellum Brain:Cerebellum, Female total RNA
11 GSM35333 Spinal cord:entire, Female (MoSC.FeEn) 14,931 Solexa 2004-11-15 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 spine Spinal cord:entire, Female total RNA
12 GSM32355 Brain:Hippocampus, Male (MoBr.MaHi) 14,190 Solexa 2004-10-14 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Hippocampus, Male total RNA
13 GSM44334 Brain:Cortical mantle, Female (MoBr.FeCM) 13,992 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Cortical mantle, Female total RNA
14 GSM32354 Brain:Cerebellum, Male (MoBr.MaCb) 13,988 Solexa 2004-10-14 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebellum Brain:Cerebellum, Male total RNA
15 GSM44336 Brain:Cortical mantle, Male (MoBr.MaCM) 13,412 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Cortical mantle, Male total RNA
16 GSM34299 Ovary, Female (MoOv.Feml) 13,365 Solexa 2004-11-01 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 ovary Ovary, Female total RNA
17 GSM38493 Eye, Female (MoEy.Feml) 13,365 Solexa 2005-01-05 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 eye Eye, Female total RNA
18 GSM112130 MoVB mouse vestibular sensory epithelia MPSS signature library 13,335 National Institute on Deafness and Other Communication Disorders (NIDCD) 2006-06-01 [MPSS] MPSS inner ear signature list (GPL3835) MPSS Mus musculus
Mus musculus		 unclassified source_name:Mouse vestibular sensory epithelia, male and female, total RNA title:MoVB mouse vestibular sensory epithelia MPSS signature library description:Mouse vestibular tissue total RNA (MoVb.B16x) received from NIDCD was analyzed through Bioanalyzer and passed our quality control test. The mRNA was processed according to the MPSS protocol as outlined in the previous publications (Brenner, S., et al. (2000) Proc Natl Acad Sci U S A 97(4): 1665-1670 and Brenner, S. et al., Nat. Biotechnol 18(6): 630-634). Briefly, the mRNA was reverse transcribed and the cDNA was digested with Dpn II. The 20 bases adjacent to the 3? most Dpn II site was cloned into a Megaclone vector. The resulting library was amplified and loaded onto microbeads. About 1.6 million microbeads were loaded into each flow cell and the signature sequences were determined by a series of enzymatic reactions as outlined in the above publications. The abundance for each signature was converted to transcripts per million (tpm) for the purpose of comparisons between samples. MoVb.B16x_sig21.5028W.d-20 6/4/2004 532451 14210 QC Passed MoVb.B16x_sig21.5028T.d-20 6/2/2004 451211 11601 QC Passed MoVb.B16x_sig21.5028W.a-20 5/27/2004 437296 10228 QC Passed MoVb.B16x_sig21.5028T.c-20 5/25/2004 333984 7826 QC Passed Total Beads successfully sequenced - 1754942 Processed Signatures - 13335
19 GSM44331 Brain:Caudate,Putamen,Accumbens,BasalForebrain, Female (MoBr.FCPA) 13,196 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Caudate,Putamen,Accumbens,BasalForebrain, Female total RNA
20 GSM36605 Brain:Caudate,Putamen,Accumbens,BasalForebrain, Male (MoBr.MCPA) 13,104 Solexa 2004-11-30 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 cerebrum Brain:Caudate,Putamen,Accumbens,BasalForebrain, Male total RNA
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