Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(76)		   SAGE RsaI
(1)		   SAGE Sau3A
(10)		   MPSS
(5)		   GeneChip
(6,053)		   Tiling Array
(284)		   cDNA Array
(717)		   Oligo Array
(2,718)		   Bead Array
(888)		   Protein Array
(0)		   Antibody
(3)		   RT-PCR
(82)		   HT-Seq
(1,149)		   Other
(30)		   All
(12,016)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 miniChIP-chip of murine hematopoietic stem cells and progeny with H3K4me3, H3K79me2, H3K9/14ac, H3K27me3, H3K9me3, PolII (GSE18734) [Oligo Array] NimbleGen Mouse MM8 Deluxe Promoter Array (GPL9485) Lund University 2009-10-26 Mus musculus
Mus musculus		 151,762,784
(2,137,504 x 71) 		17 54 by_platform
by_series
2 Epigenetic chromatin states uniquely define the developmental plasticity of murine hematopoietic stem cells (GSE18737) [Oligo Array] NimbleGen Mouse MM8 Deluxe Promoter Array (GPL9485) Lund University 2009-10-26 Mus musculus
Mus musculus		 151,762,784
(2,137,504 x 71) 		17 54 by_platform
by_series
3 DNA methylation data from mouse iPS cells, ES cells, and ntES cells (GSE22851) [Oligo Array] NimbleGen Mouse 2.1M array [Feinberg_MM8_Me_HX1] (GPL10680) Johns Hopkins University School of Medicine 2010-07-09 Mus musculus
Mus musculus		 147,186,816
(2,164,512 x 68) 		68 by_platform
by_series
4 IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (GSE40540) [Oligo Array] NimbleGen Mouse 2.1M deluxe promoter array (ver. 2) (GPL16143) Medical Research Council 2012-08-31 Mus musculus
Mus musculus		 62,575,740
(2,085,858 x 30) 		30 by_platform
by_series
5 IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (GSE40540) [Oligo Array] NimbleGen Mouse 2.1M deluxe promoter array (ver. 3) (GPL16144) Medical Research Council 2012-08-31 Mus musculus
Mus musculus		 61,689,900
(2,056,330 x 30) 		30 by_platform
by_series
6 Identification of Genes and Networks Driving Cardiovascular and Metabolic Phenotypes in a Mouse F2 Intercross (GSE25506) [Oligo Array] Rosetta/Merck Mouse 44k 1.0 microarray (GPL3677) Sage Bionetworks 2010-11-19 Mus musculus
Mus musculus		 57,593,536
(39,556 x 1,456) 		363 387 706 by_platform
by_series
7 DNA methylation data from mouse hematopoietic progenitors (GSE23110) [Oligo Array] NimbleGen Mouse 2.1M array [Feinberg_MM8_Me_HX1] (GPL10680) Johns hopkins school of Medicine 2010-07-23 Mus musculus
Mus musculus		 56,277,312
(2,164,512 x 26) 		26 by_platform
by_series
8 Profiling of copy-number variation between DNA isolation from different tissues of BN and ACI rats (GSE45308) [Oligo Array] Hubrecht Rat 2.1M HX1 (GPL9991) Hubrecht Institute 2013-03-19 Rattus norvegicus
Rattus norvegicus		 51,410,304
(2,142,096 x 24) 		24 by_platform
by_series
9 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells (GSE10656) [Oligo Array] NimbleGen Mouse 2.1M NCBI36 (GPL6436) Children's Hospital, Boston 2008-02-27 Mus musculus
Mus musculus		 42,997,740
(2,149,887 x 20) 		1 19 by_platform
by_series
10 IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (GSE40540) [Oligo Array] NimbleGen Mouse 2.1M deluxe promoter array (GPL14890) Medical Research Council 2012-08-31 Mus musculus
Mus musculus		 41,126,600
(2,056,330 x 20) 		20 by_platform
by_series
11 DNA methylation data from mouse iPS cells, ES cells, and ntES cells (GSE22851) [Oligo Array] NimbleGen Mouse 2.1M array [100512_MM8_CHARM_HX1] (GPL10683) Johns Hopkins University School of Medicine 2010-07-09 Mus musculus
Mus musculus		 36,676,310
(2,157,430 x 17) 		4 4 9 by_platform
by_series
12 CAST/EiJ x C57BL/6J cross data (GSE16227) [Oligo Array] Rosetta/Merck Mouse 25k_v3 (GPL8591) Best Institute 2009-05-26 Mus musculus
Mus musculus		 31,434,837
(23,653 x 1,329) 		443 443 443 by_platform
by_series
13 Recurrent DNA copy number variation in the laboratory mouse (GSE8980) [Oligo Array] ROMA-mouse-85K-v1.0 (GPL5824) Cold Spring Harbor Laboratory 2007-09-07 Mus musculus
Mus musculus		 28,547,904
(84,964 x 336) 		268 68 by_platform
by_series
14 lincRNAs act in the circuitry controlling pluripotency and differentiation (GSE30245) [Oligo Array] Agilent Mouse 60K lincRNA Array (GPL13767) Broad Institute 2011-06-27 Mus musculus
Mus musculus		 26,693,948
(59,452 x 449) 		449 by_platform
by_series
15 DNA methylation data from AML12 cells during EMT (GSE27968) [Oligo Array] NimbleGen Mouse 2.1M array [Feinberg_MM8_Me_HX1] (GPL10680) Johns Hopkins University School of Medicine 2011-03-15 Mus musculus
Mus musculus		 25,974,144
(2,164,512 x 12) 		12 by_platform
by_series
16 Epigenomic reprogramming during epithelial to mesenchymal transition (GSE28581) [Oligo Array] NimbleGen Mouse 2.1M array [Feinberg_MM8_Me_HX1] (GPL10680) Johns Hopkins University 2011-04-13 Mus musculus
Mus musculus		 25,974,144
(2,164,512 x 12) 		12 by_platform
by_series
17 Yap1/Birc, c-Met and N-ras DNA amplifications are mutually exclusive in mouse mammary tumors. (GSE28432) [Oligo Array] NimbleGen Mouse 385kb array [2006-07-26_MM8_WG_CGH] (GPL11620) Netherlands Cancer Institute 2011-04-06 Mus musculus
Mus musculus		 25,800,293
(385,079 x 67) 		67 by_platform
by_series
18 Liver Pharmacology and Xenobiotic Response Repertoire (GSE8858) [Oligo Array] GE Healthcare/Amersham Biosciences CodeLink UniSet Rat I Bioarray, layout EXP5280X2-584 (GPL5424) Iconix Biosciences 2007-08-23 Rattus norvegicus
Rattus norvegicus		 24,767,895
(10,455 x 2,369) 		2,369 by_platform
by_series
19 Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids (GSE9052) [Oligo Array] Agilent-014695 Mouse Genome CGH Microarray 244A (G4415A) (Feature Number version) (GPL4092) UCLA 2007-09-14 Cricetulus griseus
Cricetulus griseus		 24,350,400
(243,504 x 100) 		1 99 by_platform
by_series
20 Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids Ib (GSE9041) [Oligo Array] Agilent-014695 Mouse Genome CGH Microarray 244A (G4415A) (Feature Number version) (GPL4092) UCLA 2007-09-14 Cricetulus griseus,Mus musculus
Cricetulus griseus,Mus musculus		 24,106,896
(243,504 x 99) 		99 by_platform
by_series
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