| 1 |
GSM96922 |
C57BL/6 Cholesterol H.pylori vs. C57BL/6 |
8,014 |
Max-Planck-Institute for Infection Biology |
2006-02-16 |
[Oligo Array] Agilent Custom MPIIB Mouse (GPL1868) |
RNA |
Mus musculus
 |
unclassified |
source_name:C57BL/6 Cholesterol H.pylori C57BL/6 title:C57BL/6 Cholesterol H.pylori vs. C57BL/6 description:Total RNA was prepared using the RNeasy protocol with on-column DNAse digestion (Qiagen, Hilden, Germany) and confirmed to be intact and free of contaminating DNA using an Agilent 2100 bioanalyzer and a RNA 6000 Nano LabChip kit (Agilent Technologies, Palo Alto, CA). A custom tailored 'in situ' synthesized 60-mer oligonucleotide microarray (Agilent) comprising 8014 murine genes with immunological focus was used for expression profiling. RNA was amplified and labeled using a reverse-transcriptase/T7 polymerase linear amplification labeling kit (Agilent), and 1.5 mg of respective cRNAs labeled either with Cy3 or Cy5 were hybridized for 16 h at 65°C. Slides were used and processed according to the manufacturer's manuals. |
| 2 |
GSM96921 |
C57BL/6 vs. C57BL/6 Cholesterol H.pylori |
8,014 |
Max-Planck-Institute for Infection Biology |
2006-02-16 |
[Oligo Array] Agilent Custom MPIIB Mouse (GPL1868) |
RNA |
Mus musculus
|
unclassified |
source_name:C57BL/6 C57BL/6 Cholesterol H.pylori title:C57BL/6 vs. C57BL/6 Cholesterol H.pylori description:Total RNA was prepared using the RNeasy protocol with on-column DNAse digestion (Qiagen, Hilden, Germany) and confirmed to be intact and free of contaminating DNA using an Agilent 2100 bioanalyzer and a RNA 6000 Nano LabChip kit (Agilent Technologies, Palo Alto, CA). A custom tailored 'in situ' synthesized 60-mer oligonucleotide microarray (Agilent) comprising 8014 murine genes with immunological focus was used for expression profiling. RNA was amplified and labeled using a reverse-transcriptase/T7 polymerase linear amplification labeling kit (Agilent), and 1.5 mg of respective cRNAs labeled either with Cy3 or Cy5 were hybridized for 16 h at 65°C. Slides were used and processed according to the manufacturer's manuals. |
| 3 |
GSM96920 |
C57BL/6 H.pylori vs. C57BL/6 |
8,014 |
Max-Planck-Institute for Infection Biology |
2006-02-16 |
[Oligo Array] Agilent Custom MPIIB Mouse (GPL1868) |
RNA |
Mus musculus
|
unclassified |
source_name:C57BL/6 H.pylori C57BL/6 title:C57BL/6 H.pylori vs. C57BL/6 description:Total RNA was prepared using the RNeasy protocol with on-column DNAse digestion (Qiagen, Hilden, Germany) and confirmed to be intact and free of contaminating DNA using an Agilent 2100 bioanalyzer and a RNA 6000 Nano LabChip kit (Agilent Technologies, Palo Alto, CA). A custom tailored 'in situ' synthesized 60-mer oligonucleotide microarray (Agilent) comprising 8014 murine genes with immunological focus was used for expression profiling. RNA was amplified and labeled using a reverse-transcriptase/T7 polymerase linear amplification labeling kit (Agilent), and 1.5 mg of respective cRNAs labeled either with Cy3 or Cy5 were hybridized for 16 h at 65°C. Slides were used and processed according to the manufacturer's manuals. |
| 4 |
GSM96919 |
C57BL/6 vs. C57BL/6 H.pylori |
8,014 |
Max-Planck-Institute for Infection Biology |
2006-02-16 |
[Oligo Array] Agilent Custom MPIIB Mouse (GPL1868) |
RNA |
Mus musculus
|
unclassified |
source_name:C57BL/6 C57BL/6 H.pylori title:C57BL/6 vs. C57BL/6 H.pylori description:Total RNA was prepared using the RNeasy protocol with on-column DNAse digestion (Qiagen, Hilden, Germany) and confirmed to be intact and free of contaminating DNA using an Agilent 2100 bioanalyzer and a RNA 6000 Nano LabChip kit (Agilent Technologies, Palo Alto, CA). A custom tailored 'in situ' synthesized 60-mer oligonucleotide microarray (Agilent) comprising 8014 murine genes with immunological focus was used for expression profiling. RNA was amplified and labeled using a reverse-transcriptase/T7 polymerase linear amplification labeling kit (Agilent), and 1.5 mg of respective cRNAs labeled either with Cy3 or Cy5 were hybridized for 16 h at 65°C. Slides were used and processed according to the manufacturer's manuals. |
| 5 |
GSM950403 |
ADAM17 cKO skin, rep2 |
41,267 |
University of Freiburg |
2012-06-20 |
[Oligo Array] Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version) (GPL7202) |
RNA |
Mus musculus
|
skin |
P10 mouse back skin, ADAM17 cKO |
| 6 |
GSM950402 |
Control skin, rep2 |
41,267 |
University of Freiburg |
2012-06-20 |
[Oligo Array] Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version) (GPL7202) |
RNA |
Mus musculus
|
skin |
P10 mouse back skin, control |
| 7 |
GSM950401 |
ADAM17 cKO skin, rep1 |
41,267 |
University of Freiburg |
2012-06-20 |
[Oligo Array] Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version) (GPL7202) |
RNA |
Mus musculus
|
skin |
P10 mouse back skin, ADAM17 cKO |
| 8 |
GSM950400 |
Control skin, rep1 |
41,267 |
University of Freiburg |
2012-06-20 |
[Oligo Array] Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version) (GPL7202) |
RNA |
Mus musculus
|
skin |
P10 mouse back skin, control |
| 9 |
GSM946947 |
ASML_CD44 knock-down cells |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
 |
lymphnode |
ASML_CD44 knock-down cells |
| 10 |
GSM946946 |
ASML wild type cells |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
unclassified |
source_name:ASML wild type cells title:ASML wild type cells description:Gene expression, ASML base line |
| 11 |
GSM946945 |
ASTspan8 exosomes_replicate 1 |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
unclassified |
source_name:ASTspan8 exosomes_replicate 1 title:ASTspan8 exosomes_replicate 1 description:Gene expression, ASTspan 8 base line_replicate 1 |
| 12 |
GSM946944 |
ASTspan8 exosomes |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
unclassified |
source_name:ASTspan8 exosomes title:ASTspan8 exosomes description:Gene expression, ASTspan 8 base line |
| 13 |
GSM946943 |
RF_ASTspan8 exosomes |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
unclassified |
source_name:RF_ASTspan8 exosomes title:RF_ASTspan8 exosomes description:Gene expression, ASTspan8 exosomes treated |
| 14 |
GSM946942 |
RF_AS exosomes |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
unclassified |
source_name:RF_AS exosomes title:RF_AS exosomes description:Gene expression, AS exosomes treated |
| 15 |
GSM946941 |
RF |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
vein |
Endothelial cell lines |
| 16 |
GSM946940 |
Endothelial cell lines_ASTspan8 exosomes_replicate 1 |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
vein |
Endothelial cell lines_ASTspan 8 exosomes_replicate 1 |
| 17 |
GSM946939 |
Endothelial cell lines_ASTspan8 exosomes |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
vein |
Endothelial cell lines_ASTspan 8 exosomes |
| 18 |
GSM946938 |
Endothelial cell lines_AS exosomes |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
vein |
Endothelial cell lines_AS exosomes |
| 19 |
GSM946937 |
Endothelial cells, control |
30,367 |
University Hostipal Heidelberg |
2012-06-12 |
[Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version) (GPL15084) |
RNA |
Rattus norvegicus
|
vein |
Endothelial cell lines |
| 20 |
GSM906817 |
DEN_LT628T1 |
238,202 |
University of Ulm |
2012-03-29 |
[Oligo Array] Agilent-014695 Mouse Genome CGH Microarray 244A (G4415A) (Feature Number version) (GPL4092) |
genomic |
Mus musculus
|
liver/hepato |
DEN induced liver tumor (HCC), TTD- |