Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(6)		   SAGE RsaI
(1)		   SAGE Sau3A
(2)		   MPSS
(4)		   GeneChip
(133)		   Tiling Array
(141)		   cDNA Array
(403)		   Oligo Array
(857)		   Bead Array
(57)		   Protein Array
(0)		   Antibody
(2)		   RT-PCR
(50)		   HT-Seq
(79)		   Other
(13)		   All
(1,748)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL2847 Applied Biosystems TaqMan Gene Expression Assays (rat) 150,478 Life Technologies 2005-09-14 Applied Biosystems Rattus norvegicus
Rattus norvegicus		 RT-PCR RT-PCR, Applied Biosystems TaqMan Gene Expression Assays (rat), Pre-designed TaqMan probe and primer sets for quantitative gene expression studies of rat genes.
2 GPL2850 Applied Biosystems TaqMan Gene Expression Assays (mouse) 175,755 Life Technologies 2005-09-15 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems TaqMan Gene Expression Assays (mouse), Pre-designed TaqMan probe and primer sets for quantitative gene expression studies of mouse genes.
3 GPL5073 Applied Biosystems Customized TaqMan Low Density Array (Mouse) _ In vivo T cell gene expression 384 University of Birmingham 2007-04-09 Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems Customized TaqMan Low Density Array (Mouse) _ In vivo T cell gene expression, To probe T cell responses in vivo, naïve OVA-specific transgenic CD4 T (OTII) cells were transferred into normal mice and the chimeras were then immunized with specific forms of OVA driving either a Th1 or a Th2 type of immune responses. This was achieved respectively by following the response in the draining lymph node after immunizing subcutaneously, either with live attenuated Salmonella typhimurium engineered to express an OVA transgene, or alum-precipitated OVA. Virtual platform listing 384 in vivo T cell polarization-related candidate genes investigated using RT-PCR.
4 GPL5152 RT^2 Profiler PCR Array Mouse Angiogenesis (PAMM-024A) 90 Lab of Bioeffects of Nanosized Materials, Institute of High Energy Physics 2007-05-09 Mus musculus
Mus musculus		 RT-PCR RT-PCR, RT^2 Profiler PCR Array Mouse Angiogenesis (PAMM-024A), We synthesize a novel nanoparticle with functional surface coating, which inhibits tumor growth without detectable cytotoxicities by suppress angiogenesis in the tumor mass. Quantitative counting RTPCR-array analysis was used to evalute the pro-angiogenic factor(s) on mRNA level.
5 GPL5153 PCR Array Mouse Angiogenesis(PA-012) 89 Lab of Bioeffects of Nanosized Materials, Institute of High Energy Physics 2007-05-10 Mus musculus
Mus musculus		 RT-PCR RT-PCR, PCR Array Mouse Angiogenesis(PA-012), We synthesize a novel nanoparticle with functional surface coating, which inhibits tumor growth without detectable cytotoxicities by suppress angiogenesis in the tumor mass. Quantitative counting RTPCR-array analysis was used to evalute the pro-angiogenic factor(s) on mRNA level.
6 GPL5174 Applied Biosystems TaqMan mouse B cell_low density array 96 University of Birmingham 2007-05-18 Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems TaqMan mouse B cell_low density array, A custom designed low density TaqMan array.
7 GPL7701 CNRS Mouse 432 GPCR1 v1.0 432 MGX - Montpellier GenomiX 2008-11-26 Mus musculus
Mus musculus		 RT-PCR RT-PCR, CNRS Mouse 432 GPCR1 v1.0,
8 GPL7726 SuperArray Mouse Th-17 pathway PCR Array 96 University of Southern California 2008-12-02 Mus musculus
Mus musculus		 RT-PCR RT-PCR, SuperArray Mouse Th-17 pathway PCR Array, The Mouse Th17 for Autoimmunity & Inflammation RT²Profiler™ PCR Array profiles the expression of 84 genes related to the Th17 Regulatory Network. Th17 is a newly defined subset of CD4(+) T cells that is distinct from the traditional Th1, Th2 and Treg. Th17 is highly proinflammatory and induces severe autoimmunity. This array contains surface molecules, cytokines and receptors, chemokines, matrix metalloproteinases, cell signaling molecules and transcriptional factors. Using real-time PCR, you can easily and reliably analyze expression of a focused panel of genes related to the Th17 regulatory network with this array.
9 GPL7747 SuperArray Mouse Th1-Th2-Th3 PCR Array PCR Array 96 University of Southern California 2008-12-05 Mus musculus
Mus musculus		 RT-PCR RT-PCR, SuperArray Mouse Th1-Th2-Th3 PCR Array PCR Array, The Mouse Th1-Th2-Th3 RT² Profiler™ PCR Array profiles the expression of 84 genes related to the three classes of helper T cells (CD4+ T lymphocytes): Th1, Th2, and Th3. This array includes cytokine genes representative of Th1, Th2 and Th3 cells. The array also contains genes encoding transcriptional factors that regulate the expression of these cytokines as well as other markers of CD4+ T lymphocytes. Genes involved in immune cell activation, in the Th1 and Th2 type immune responses, and genes involved in the antimicrobial humoral response are included on this array as well as other immune response-related genes. Using real-time PCR, you can easily and reliably analyze expression of a focused panel of genes related to helper T cells with this array.
10 GPL8527 Applied_Biosystems_Taqman_miRNA_Expression Assays_A (Mouse) 381 UT Health Science Ctr San Antonio 2009-05-06 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied_Biosystems_Taqman_miRNA_Expression Assays_A (Mouse), Taqman Array A for miRNA from Applied Biosystems
11 GPL8526 Applied_Biosystems_Taqman_miRNA_Expression Assays_B (Mouse) 216 UT Health Science Ctr San Antonio 2009-05-06 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied_Biosystems_Taqman_miRNA_Expression Assays_B (Mouse), TaqMan microRNA Array B from Applied Biosystems
12 GPL10253 Applied Biosystems Taqman miRNA Expression Assays A and B 516 Mayo Clinic 2010-03-24 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems Taqman miRNA Expression Assays A and B, Taqman Array A and B for miRNA from Applied Biosystems
13 GPL10331 TaqMan® Rodent miRNA A+B Cards Set v2.0 471 health canada 2010-04-15 Applied Biosystem Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, TaqMan® Rodent miRNA A+B Cards Set v2.0, The TaqMan® Rodent MicroRNA Array Set v2.0 is a two card set containing a total of 364 TaqMan® MicroRNA Assays per card. The set enables accurate quantitation of 518 and 303 unique microRNAs for mouse and rat respectively in as little as 5 hours. Included on each array is three TaqMan® MicroRNA Assay endogenous controls for each species to aid in data normalization and one TaqMan® MicroRNA Assay not related to human as a negative control. Details on the included assays is available in the Target List file. Purchase of the Megaplex RT Primers, Rodent Pool Set is required to run this array set. An additional preamplification step is enabled by Megaplex PreAmp Primers, Rodent Pool Set for situations where sensitivity is of the utmost importance and/or sample is limiting.
14 GPL11121 Mouse Interferon α, β RT² Profiler PCR Array (PAMM 016) 96 Drexel University 2010-10-27 SABiosciences Mus musculus
Mus musculus		 RT-PCR RT-PCR, Mouse Interferon α, β RT² Profiler PCR Array (PAMM 016), Housekeeping genes (GAPDH and b-Actin) were marked on spots H04 and H05. To check for mouse genomic contamination (H06). Reverse transcription controls (H07-H09). Positive PCR controls (H10-H12).
15 GPL11122 Mouse Dendritic and Antigen Presenting Cell RT² Profiler PCR Array (PAMM 406) 96 Drexel University 2010-10-27 SABiosciences Mus musculus
Mus musculus		 RT-PCR RT-PCR, Mouse Dendritic and Antigen Presenting Cell RT² Profiler PCR Array (PAMM 406), Housekeeping genes (GAPDH and b-Actin) were marked on spots H04 and H05. To check for mouse genomic contamination (H06). Reverse transcription controls (H07-H09). Positive PCR controls (H10-H12).
16 GPL11163 NIH Taqman Mouse MicroRNA Array 517 National Institutes of Health 2010-11-04 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, NIH Taqman Mouse MicroRNA Array,
17 GPL11199 Applied Biosystems Mouse Taqman miRNA Expression Assays A and B 768 Mayo Clinic 2010-11-11 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems Mouse Taqman miRNA Expression Assays A and B, Cards A and B.
18 GPL11419 Applied Biosystems Taqman miRNA Expression Assays A and B 519 Ludwig-Maximilians-University 2011-01-11 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems Taqman miRNA Expression Assays A and B,
19 GPL11636 TaqMan® Rodent miRNA card A v2.0 384 Stanford University School of Medicine 2011-01-20 Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, TaqMan® Rodent miRNA card A v2.0, A Card Content: MicroRNAs of demonstrated interest to the research community (these tend to be functionally defined, broadly expressed and/or highly expressed).
20 GPL11637 TaqMan® Rodent miRNA Card B v2.0 384 Stanford University School of Medicine 2011-01-20 Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, TaqMan® Rodent miRNA Card B v2.0, B Card Content: MicroRNAs less extensively studied (these tend to have less defined functions, be narrowly expressed, and/or be expressed at a low level).
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