Gene Expression Omnibus (GEO) Overview Version:2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)
  Primates
(39)
  Rodents
(1,779)
  Mammals
(312)
  Vertebrates
(411)
  Invertebrates
(1,032)
  Plants
(2,239)
  Bacteria
(1,690)
  Viruses
(78)
  Phages
(8)
  Unclassified
(430)
  All
(11,831)
 
  SAGE NlaIII
(6)
  SAGE RsaI
(1)
  SAGE Sau3A
(2)
  MPSS
(4)
  GeneChip
(139)
  Tiling Array
(142)
  cDNA Array
(403)
  Oligo Array
(869)
  Bead Array
(58)
  Protein Array
(0)
  Antibody
(3)
  RT-PCR
(54)
  HT-Seq
(85)
  Other
(13)
  All
(1,779)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL14362 Anti-viral Innate Immunity Pathway PCR assay Panel 212 Harvard Medical School 2011-08-31 Roche Mus musculus
Mus musculus
RT-PCR RT-PCR, Anti-viral Innate Immunity Pathway PCR assay Panel, real time PCR assay
2 GPL5073 Applied Biosystems Customized TaqMan Low Density Array (Mouse) _ In vivo T cell gene expression 384 University of Birmingham 2007-04-09 Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied Biosystems Customized TaqMan Low Density Array (Mouse) _ In vivo T cell gene expression, To probe T cell responses in vivo, naïve OVA-specific transgenic CD4 T (OTII) cells were transferred into normal mice and the chimeras were then immunized with specific forms of OVA driving either a Th1 or a Th2 type of immune responses. This was achieved respectively by following the response in the draining lymph node after immunizing subcutaneously, either with live attenuated Salmonella typhimurium engineered to express an OVA transgene, or alum-precipitated OVA. Virtual platform listing 384 in vivo T cell polarization-related candidate genes investigated using RT-PCR.
3 GPL14605 Applied Biosystems Low Density Taquman Rat Inflammatory Array 96 University of South Carolina-School of Medicine 2011-09-22 Applied Biosystems Rattus norvegicus
Rattus norvegicus
RT-PCR RT-PCR, Applied Biosystems Low Density Taquman Rat Inflammatory Array, see manufacturer's website
4 GPL11199 Applied Biosystems Mouse Taqman miRNA Expression Assays A and B 768 Mayo Clinic 2010-11-11 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied Biosystems Mouse Taqman miRNA Expression Assays A and B, Cards A and B.
5 GPL16145 Applied Biosystems Open Array Custom Assays (rat) 110 Ontario Institute of Cancer Research 2012-10-05 Applied Biosystems Rattus norvegicus
Rattus norvegicus
RT-PCR RT-PCR, Applied Biosystems Open Array Custom Assays (rat), PCR assay
6 GPL16146 Applied Biosystems qPCR Custom Assays (rat) 105 Ontario Institute of Cancer Research 2012-10-05 Applied Biosystems Rattus norvegicus
Rattus norvegicus
RT-PCR RT-PCR, Applied Biosystems qPCR Custom Assays (rat), PCR assay
7 GPL15053 Applied Biosystems Taqman Array Rodent MicroRNA Cards v2.0 591 Ludwig-Maximilians-University 2011-12-22 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied Biosystems Taqman Array Rodent MicroRNA Cards v2.0, Taqman Array A and B for miRNA from Applied Biosystems
8 GPL2850 Applied Biosystems TaqMan Gene Expression Assays (mouse) 175,755 Life Technologies 2005-09-15 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied Biosystems TaqMan Gene Expression Assays (mouse), Pre-designed TaqMan probe and primer sets for quantitative gene expression studies of mouse genes.
9 GPL2847 Applied Biosystems TaqMan Gene Expression Assays (rat) 150,478 Life Technologies 2005-09-14 Applied Biosystems Rattus norvegicus
Rattus norvegicus
RT-PCR RT-PCR, Applied Biosystems TaqMan Gene Expression Assays (rat), Pre-designed TaqMan probe and primer sets for quantitative gene expression studies of rat genes.
10 GPL15673 Applied Biosystems TaqMan miRNA Expression Assays A and B 520 Ludwig-Maximilians-University 2012-06-06 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied Biosystems TaqMan miRNA Expression Assays A and B, PCR assay.
11 GPL11419 Applied Biosystems Taqman miRNA Expression Assays A and B 519 Ludwig-Maximilians-University 2011-01-11 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied Biosystems Taqman miRNA Expression Assays A and B,
12 GPL10253 Applied Biosystems Taqman miRNA Expression Assays A and B 516 Mayo Clinic 2010-03-24 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied Biosystems Taqman miRNA Expression Assays A and B, Taqman Array A and B for miRNA from Applied Biosystems
13 GPL5174 Applied Biosystems TaqMan mouse B cell_low density array 96 University of Birmingham 2007-05-18 Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied Biosystems TaqMan mouse B cell_low density array, A custom designed low density TaqMan array.
14 GPL15350 Applied Biosystems TaqMan Rodent MicroRNA Array A 384 SBMRI 2012-03-14 Applied Biosystems Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus
RT-PCR RT-PCR, Applied Biosystems TaqMan Rodent MicroRNA Array A, PCR assay Standard TaqMan Assay
15 GPL15351 Applied Biosystems TaqMan Rodent MicroRNA Array B 384 SBMRI 2012-03-14 Applied Biosystems Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus
RT-PCR RT-PCR, Applied Biosystems TaqMan Rodent MicroRNA Array B, PCR assay Standard TaqMan Assay
16 GPL8527 Applied_Biosystems_Taqman_miRNA_Expression Assays_A (Mouse) 381 UT Health Science Ctr San Antonio 2009-05-06 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied_Biosystems_Taqman_miRNA_Expression Assays_A (Mouse), Taqman Array A for miRNA from Applied Biosystems
17 GPL8526 Applied_Biosystems_Taqman_miRNA_Expression Assays_B (Mouse) 216 UT Health Science Ctr San Antonio 2009-05-06 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied_Biosystems_Taqman_miRNA_Expression Assays_B (Mouse), TaqMan microRNA Array B from Applied Biosystems
18 GPL7701 CNRS Mouse 432 GPCR1 v1.0 432 MGX - Montpellier GenomiX 2008-11-26 Mus musculus
Mus musculus
RT-PCR RT-PCR, CNRS Mouse 432 GPCR1 v1.0,
19 GPL15766 Life Technologies murine miRNA expression assays Murine Megaplex pools A and B 522 Center for Medical Genetics 2012-07-04 Life Technologies Mus musculus
Mus musculus
RT-PCR RT-PCR, Life Technologies murine miRNA expression assays Murine Megaplex pools A and B, PCR assay
20 GPL15844 Lonza StellARay mouse cell cycle qPCR array 25 University of Michigan 2012-07-24 Lonza Mus musculus
Mus musculus
RT-PCR RT-PCR, Lonza StellARay mouse cell cycle qPCR array, PCR assay for cell cycle-related genes.
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