Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(718)		   SAGE RsaI
(3)		   SAGE Sau3A
(37)		   MPSS
(100)		   GeneChip
(89,973)		   Tiling Array
(2,000)		   cDNA Array
(11,116)		   Oligo Array
(53,181)		   Bead Array
(13,914)		   Protein Array
(0)		   Antibody
(22)		   RT-PCR
(885)		   HT-Seq
(8,762)		   Other
(395)		   All
(181,106)		  
  brain
(221)		   blood
(81)		   connective
(35)		   reproductive
(45)		   muscular
(44)		   digestive
(24)		   liver
(12)		   lung
(24)		   urinary
(31)		   endo/exo-crine
(76)		   embryo
(78)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(25)		   unclassified
(22)		   all
(718)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM172849 PCCl3_iodide_24h_1 11,478 USP - University of Sao Paulo 2007-03-02 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 thyroid/parathyroid rat thyroid cell PCC3_iodide treated_24h
2 GSM172848 PCCl3_24h_1 9,963 USP - University of Sao Paulo 2007-03-02 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 thyroid/parathyroid PCCl3 thyroid follicular cell, 24h
3 GSM29040 injured LSEC 13,407 University of Tokyo 2004-08-17 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 pooled C57BL/6J mouse liver sinusoidal endothelial cells
4 GSM29039 normal LSEC 13,038 University of Tokyo 2004-08-17 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 pooled C57BL/6J mouse liver sinusoidal endothelial cells
5 GSM132451 Mouse bone marrow derived dendritic cells LPS matured - LongSAGE 17,900 University of Oxford 2006-08-29 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus		 bone marrow Mouse bone marrow derived dendritic cells LPS matured (CBA/Ca and Balbc mixed library)
6 GSM3679 Treg clone Tr1D1 culture 16,419 University of Oxford 2003-01-15 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 lymphnode CD4+ Tr1-like clone H-Y specific (resting)
7 GSM3831 ES derived DCs (LPS treated) 14,656 University of Oxford 2003-02-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 lymphnode Dendritic cells derived from ESF 116 stem cell line treated with LPS
8 GSM3686 CD4+CD25+ spleen 13,016 University of Oxford 2003-01-15 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 spleen CD4+CD25+ spleen cells
9 GSM132450 Mouse bmDC treated with TGF-beta 11,289 University of Oxford 2006-08-29 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus		 pooled Mouse bone marrow cultured in 25ng/ml GM-CSF plus 2ng/ml rhTGFbeta1
10 GSM3683 CD4+CD25neg spleen 11,094 University of Oxford 2003-01-15 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 pooled MACS sorted CD4+CD25- spleen T cells
11 GSM3830 ES derived DCs 10,283 University of Oxford 2003-02-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 lymphnode Dendritic cells derived from ESF 116 stem cell line
12 GSM3835 bmDC (IL-10+LPS) 10,100 University of Oxford 2003-02-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 bone marrow Mouse bone marrow derived dendritic cells (IL-10 plus LPS treated)
13 GSM3834 bmDC (IL-10 treated) 8,897 University of Oxford 2003-02-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 bone marrow Mouse bone marrow derived dendritic cells (IL-10 treated)
14 GSM3827 Th1 clone R2.2 (CD3 activated) 8,560 University of Oxford 2003-02-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 lymphnode CD4+ Th1 clone R2.2: overnight activation with anti-CD3
15 GSM3684 CD4+CD25+ activated 8,482 University of Oxford 2003-01-15 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 spleen CD4+CD25+ spleen cells (CD3 X-linked)
16 GSM3685 CD4+CD25neg activated 8,207 University of Oxford 2003-01-15 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 spleen CD4+CD25- spleen cells (CD3 X-linked)
17 GSM3828 BW5147 thymoma 8,083 University of Oxford 2003-02-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 thymus Mouse thymoma line BW (TCR alpha/beta negative)
18 GSM3682 Treg line SKA from skin graft 7,959 University of Oxford 2003-01-15 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 lymphnode CD4+ Tr1-like T cell line H-Y specific (resting)
19 GSM3833 bmDC (mouse) 7,841 University of Oxford 2003-02-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 bone marrow Mouse bone marrow derived dendritic cells
20 GSM3680 Skin graft draining nodes 7,526 University of Oxford 2003-01-15 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 pooled Lymph nodes draining skin graft
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