Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(6)
  SAGE RsaI
(1)
  SAGE Sau3A
(2)
  MPSS
(4)
  GeneChip
(167)
  Tiling Array
(144)
  cDNA Array
(408)
  Oligo Array
(928)
  Bead Array
(63)
  Protein Array
(0)
  Antibody
(4)
  RT-PCR
(68)
  HT-Seq
(92)
  Other
(20)
  All
(1,907)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1437 Mouse miRNA chip 21,939 Best Institute 2004-09-06 Mus musculus
Mus musculus
Tiling Array spotted DNA/cDNA, Mouse miRNA chip, We describe a method to detect miRNAs using microarrays, in which the miRNAs are directly hybridized to the array. We used this method to analyze miRNA expression across 16 mouse organs and tissues. More than half of the 78 miRNAs detected were expressed in specific adult tissues. By comparing miRNA levels to mRNA levels determined in a parallel microarray analysis of the same tissues, we found that the expression of target mRNAs predicted on the basis of sequence similarity is biased towards the tissues in which the corresponding miRNA is expressed. The data shown here includes data for 361 other ncRNAs as positive controls. Probes were generated by tiling across each transcript, including 100 nucleotides of flanking sequence extracted from genomic sequence. Keywords = miRNA mouse
2 GPL4317 Custom Genome PCR Tiling Array of the Igf2r Imprinted Gene Cluster 3,520 Center of Molecular Medicine (CeMM) 2006-09-14 Biooptics Department, Research Institute of Molecular Pathology (IMP), Vienna, Austria Mus musculus
Mus musculus
Tiling Array spotted DNA/cDNA, Custom Genome PCR Tiling Array of the Igf2r Imprinted Gene Cluster,
3 GPL4931 Nimblegen 1.5M Mouse Condensed Tiling array of mm5 at 100bp resolution v1.0 set 1 of 4 391,015 Ludwig Institute for Cancer Research 2007-03-06 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 1.5M Mouse Condensed Tiling array of mm5 at 100bp resolution v1.0 set 1 of 4, The 4 condensed scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 1,495,582 50-mer oligonucleotides. The tiled probes are within the regions bound by Pol2 in brain, heart, kidney, liver or mES from the genomewide scan. There are a total of 4 arrays. This is set 1.
4 GPL4932 Nimblegen 1.5M Mouse Condensed Tiling array of mm5 at 100bp resolution v1.0 set 2 of 4 391,015 Ludwig Institute for Cancer Research 2007-03-06 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 1.5M Mouse Condensed Tiling array of mm5 at 100bp resolution v1.0 set 2 of 4, The 4 condensed scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 1,495,582 50-mer oligonucleotides. The tiled probes are within the regions bound by Pol2 in brain, heart, kidney, liver or mES from the genomewide scan. There are a total of 4 arrays. This is set 2.
5 GPL4933 Nimblegen 1.5M Mouse Condensed Tiling array of mm5 at 100bp resolution v1.0 set 3 of 4 391,015 Ludwig Institute for Cancer Research 2007-03-06 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 1.5M Mouse Condensed Tiling array of mm5 at 100bp resolution v1.0 set 3 of 4, The 4 condensed scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 1,495,582 50-mer oligonucleotides. The tiled probes are within the regions bound by Pol2 in brain, heart, kidney, liver or mES from the genomewide scan. There are a total of 4 arrays. This is set 3.
6 GPL4934 Nimblegen 1.5M Mouse Condensed Tiling array of mm5 at 100bp resolution v1.0 set 4 of 4 391,015 Ludwig Institute for Cancer Research 2007-03-06 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 1.5M Mouse Condensed Tiling array of mm5 at 100bp resolution v1.0 set 4 of 4, The 4 condensed scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 1,495,582 50-mer oligonucleotides. The tiled probes are within the regions bound by Pol2 in brain, heart, kidney, liver or mES from the genomewide scan. There are a total of 4 arrays. This is set 4.
7 GPL4941 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 01 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 01 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 01.
8 GPL4942 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 02 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 02 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 02.
9 GPL4943 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 03 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 03 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 03.
10 GPL4944 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 04 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 04 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 04.
11 GPL4945 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 05 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 05 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 05.
12 GPL4946 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 06 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 06 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 06.
13 GPL4947 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 07 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 07 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 07.
14 GPL4948 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 08 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 08 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 08.
15 GPL4949 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 09 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 09 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 09.
16 GPL4950 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 10 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 10 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 10.
17 GPL4951 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 11 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 11 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 11.
18 GPL4952 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 12 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 12 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 12.
19 GPL4953 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 13 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 13 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 13.
20 GPL4954 Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 14 of 37 390,619 Ludwig Institute for Cancer Research 2007-03-07 Nimblegen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 14 of 37, The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 14.
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