Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(226)		   Primates
(8)		   Rodents
(284)		   Mammals
(11)		   Vertebrates
(10)		   Invertebrates
(56)		   Plants
(108)		   Bacteria
(55)		   Viruses
(0)		   Phages
(0)		   Unclassified
(6)		   All
(764)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(157)		   Tiling Array
(28)		   cDNA Array
(28)		   Oligo Array
(22)		   Bead Array
(10)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(39)		   Other
(0)		   All
(284)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Methylation-dependent and -independent genomic targeting principles of the MBD protein family (GSE39610) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Friedrich Miescher Institute for Biomedical Research 2012-07-24 Mus musculus
Mus musculus		 1
(0 x 1) 		1 by_platform
by_series
2 Ptf1a binding sites in a pancreatic cell line which mimics embryonic day E10.5 pancreas progenitors. (GSE27295) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) Ecole Polytechnique Fédérale de Lausanne 2011-02-14 Mus musculus
Mus musculus		 2
(0 x 2) 		2 by_platform
by_series
3 DNA binding factors shape the mouse methylome at distal regulatory regions [BIS_seq] (GSE30202) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Friedrich Miescher Institute for Biomedical Research 2011-06-24 Mus musculus
Mus musculus		 2
(0 x 2) 		1 1 by_platform
by_series
4 DNA binding factors shape the mouse methylome at distal regulatory regions [BIS_seq] (GSE30202) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Friedrich Miescher Institute for Biomedical Research 2011-06-24 Mus musculus
Mus musculus		 2
(0 x 2) 		1 1 by_platform
by_series
5 DNA binding factors shape the mouse methylome at distal regulatory regions. (GSE30206) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Friedrich Miescher Institute for Biomedical Research 2011-06-24 Mus musculus
Mus musculus		 2
(0 x 2) 		1 1 by_platform
by_series
6 RNA-seq and expression profile of WT and ZFP57 KO ES cells (GSE31182) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) EPFL SV 2011-08-03 Mus musculus
Mus musculus		 2
(0 x 2) 		2 by_platform
by_series
7 Transcription landscape at the HoxD locus in developing limbs and brain (GSE31656) [Tiling Array] Mus musculus HoxD cluster tiling PRNFGMm2b520462F (GPL14183) EPFL 2011-08-25 Mus musculus
Mus musculus		 2
(0 x 2) 		1 1 by_platform
by_series
8 HIGHLY DIVERSE TCRalpha CHAIN REPERTOIRE OF PRE-IMMUNE CD8+ T CELLS REVEALS NEW INSIGHTS IN GENE RECOMBINATION (GSE35626) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Swiss Institute of Bioinformatics 2012-02-08 Mus musculus
Mus musculus		 2
(0 x 2) 		2 by_platform
by_series
9 Genome-wide mapping of Nuclear Factor I binding sites using ChIP-Seq in WT and NFI-C knock-out MEFs (GSE15844) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) Faculty of Biology and Medicine, University of Lausanne 2009-04-27 Mus musculus
Mus musculus		 3
(0 x 3) 		3 by_platform
by_series
10 ChIP-Seq of HA tagged ZFP57 and KAP1 in mouse ES cells (GSE31181) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) EPFL SV 2011-08-03 Mus musculus
Mus musculus		 3
(0 x 3) 		3 by_platform
by_series
11 PRC1 coordinates timing of sexual differentiation of female primordial germ cells (RNA-Seq) (GSE42852) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) FMI 2012-12-11 Mus musculus
Mus musculus		 3
(0 x 3) 		3 by_platform
by_series
12 KRAB/KAP1-microRNA cascade regulates erythropoiesis through the stage-specific control of mitophagy [Seq] (GSE44061) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) EPFL 2013-02-05 Mus musculus
Mus musculus		 3
(0 x 3) 		3 by_platform
by_series
13 KRAB/KAP1-microRNA cascade regulates erythropoiesis through the stage-specific control of mitophagy (GSE44065) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) EPFL 2013-02-05 Mus musculus
Mus musculus		 3
(0 x 3) 		3 by_platform
by_series
14 DNA binding factors shape the mouse methylome at distal regulatory regions [strand-specific-RNA-seq] (GSE31385) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Friedrich Miescher Institute for Biomedical Research 2011-08-15 Mus musculus
Mus musculus		 4
(0 x 4) 		2 2 by_platform
by_series
15 ZFP57/KAP1 recognize a methylated hexanucleotide to affect the chromatin and DNA methylation of imprinting control regions in embryonic stem cells (GSE31183) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) EPFL SV 2011-08-03 Mus musculus
Mus musculus		 5
(0 x 5) 		5 by_platform
by_series
16 The Dynamic Architecture of Hox Gene Clusters (GSE31570) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) EPFL 2011-08-22 Mus musculus
Mus musculus		 5
(0 x 5) 		2 3 by_platform
by_series
17 Comparison of the testicular transcriptome of chromosomes 2, X, Y and the mitochondrial genome between two mouse species (GSE19633) [Tiling Array] [Mm35b_P02R] Affymetrix Mouse Tiling 2.0R Set, Array 2 (GPL6445) Department of Biomedicine 2009-12-23 Mus musculus domesticus
Mus musculus domesticus		 6
(0 x 6) 		6 by_platform
by_series
18 Whole Transcriptome Data from Embryonic Mouse Limb-Buds (GSE27417) [Tiling Array] [Mm35b_M01R_v01] Affymetrix Mouse Tiling 1.1R Array Set (GPL13194) EPFL 2011-02-18 Mus musculus
Mus musculus		 6
(0 x 6) 		6 by_platform
by_series
19 Whole Transcriptome Data from Embryonic Mouse Limb-Buds (GSE27417) [Tiling Array] [Mm35b_M02R_v01] Affymetrix Mouse Tiling 1.1R Array Set (GPL13195) EPFL 2011-02-18 Mus musculus
Mus musculus		 6
(0 x 6) 		6 by_platform
by_series
20 Whole Transcriptome Data from Embryonic Mouse Limb-Buds (GSE27417) [Tiling Array] [Mm35b_M03R_v01] Affymetrix Mouse Tiling 1.1R Array Set (GPL13196) EPFL 2011-02-18 Mus musculus
Mus musculus		 6
(0 x 6) 		6 by_platform
by_series
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