Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(149)
  Primates
(1)
  Rodents
(81)
  Mammals
(11)
  Vertebrates
(11)
  Invertebrates
(15)
  Plants
(61)
  Bacteria
(95)
  Viruses
(1)
  Phages
(0)
  Unclassified
(43)
  All
(470)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(18)
  Tiling Array
(0)
  cDNA Array
(23)
  Oligo Array
(31)
  Bead Array
(2)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(4)
  HT-Seq
(0)
  Other
(3)
  All
(81)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16605 NimbleGen_MM9_3x720K_Refseq_Promoter [090618_MM9_Refseq_Prom_ChIP] 714,900 EMBL 2013-02-07 Nimblegen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen_MM9_3x720K_Refseq_Promoter [090618_MM9_Refseq_Prom_ChIP],
2 GPL8085 Murine custom chip-on-chip 244k oligo array (AMADID: 018915) 240,662 University Hospital Regensburg 2009-01-16 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Murine custom chip-on-chip 244k oligo array (AMADID: 018915),
3 GPL3240 Affymetrix GeneChip Rat Expression Set 230 Array RAE230A PM probes 175,477 University Heidelberg 2005-12-08 Affymetrix Rattus norvegicus
Rattus norvegicus
GeneChip in situ oligonucleotide, Affymetrix GeneChip Rat Expression Set 230 Array RAE230A PM probes,
4 GPL15426 Agilent-035655 Mouse miRNA_v17 62,976 Zentrum für klinische Tiermedizin 2012-04-11 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent-035655 Mouse miRNA_v17, Mus musculus miRNAs MiRBase v17 (Agilent Arrays of this design have barcodes that begin with 16035655 or 2535655. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
5 GPL16796 Agilent-041078 mouse_60k_MH 54,677 Helmholtz-Zentrum München 2013-03-15 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent-041078 mouse_60k_MH, Arrays of this design have barcodes that begin with 16041078 or 2541078. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
6 GPL7122 Agilent Mouse Developmental Custom Microarray 44K (RIKEN-BioResurce +MPI-MolecularBiomedicine) 44,290 Max Planck Institute for Molecular Biomedicine 2008-08-03 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent Mouse Developmental Custom Microarray 44K (RIKEN-BioResurce +MPI-MolecularBiomedicine),
7 GPL765 MJArray Mus Musculus 43,200 Forschungszentrum Karlsruhe 2003-12-01 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, MJArray Mus Musculus, cDNA microarrays based on the Lion Bioscience (Heidelberg, Germany) clone collection Mouse ArrayTag(r) set A and B. Each microarray contains 43200 features within two seperate subarrays with each 21600 spots and 20188 spots containing gene probes. The ID is organized like this: Letter "A" or "B" to distiguish both subarrays from each other, followed by the # sign an a running index for each subarray (1 to 21600). probe length: 200 - 600 bp; printed concentration: 200 - 400 ng/µl; printing buffer: 150 mM sodium phosphate, pH 8.5, 1.5 M betaine; substrates: Corning GAPS II; microarray robot: Genemachines Omingrid 100; Printhead: Telechem; Pins: Telechem SMP3; Keywords = Lion ArrayTag Keywords = 43k chip Keywords = Forschungszentrum Karlsruhe
8 GPL14006 Agilent-015028 Mouse Genome CGH Microarray 44K G4426B (ProbeName version), mm9 42,076 University Medical Center Hamburg-Eppendorf 2011-08-01 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent-015028 Mouse Genome CGH Microarray 44K G4426B (ProbeName version), mm9, Same physical array as GPL11288, but with updated annotation based on NCBI37/mm9 assembly.
9 GPL10761 Applied Microarrays CodeLink Mouse Whole Genome Bioarray 36,227 Institute for Medical Microbiology 2010-08-04 Applied Microarrays Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Applied Microarrays CodeLink Mouse Whole Genome Bioarray,
10 GPL13188 Operon OpArray - Mus Musculus - 38k v4.0.3 36,008 University of Regensburg 2011-02-17 Operon Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Operon OpArray - Mus Musculus - 38k v4.0.3,
11 GPL9079 GE Healthcare/Amersham Biosciences CodeLinkâ„¢ Mouse Whole Genome Bioarray (EMBL180809) 35,587 University of Rostock 2009-08-21 GE Healthcare Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, GE Healthcare/Amersham Biosciences CodeLinkâ„¢ Mouse Whole Genome Bioarray (EMBL180809),
12 GPL5825 EMBL30807 (GE Healthcare/Amersham Mouse Whole Genome Bioarray) 35,557 EMBL-Heidelberg 2007-09-10 GE Healthcare/Amersham Biosciences CodeLinkâ„¢ Mouse Whole Genome Bioarray Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, EMBL30807 (GE Healthcare/Amersham Mouse Whole Genome Bioarray),
13 GPL11067 JLUGiMM-rattus norvegicus-35k-v1.0 35,129 Justus Liebig Universität Giessen 2010-10-18 GE Healthcare Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, JLUGiMM-rattus norvegicus-35k-v1.0,
14 GPL16682 [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [xmapcore Ensembl mouse version 62] 27,163 Charite Universitätsmedizin Berlin 2013-02-14 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [xmapcore Ensembl mouse version 62], xmapcore database for Ensembl mouse version 62 (http://annmap.picr.man.ac.uk/download/). Attached supplementary file (GPL16682_table_map_probeset_ensg.txt) is used to assign the probes that map to consensus exons, i.e. exons that are contained in the majority of transcripts. This file was generated using xmapcore.
15 GPL6576 DKFZ/Operon mouse 35K Oligo Set v4.0 26,508 DKFZ 2008-03-12 Division Molecular Genetics, DKFZ Heidelberg, Germany Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, DKFZ/Operon mouse 35K Oligo Set v4.0, Spotted long oligonucleotide array produced using the Operon mouse Genome Oligo Set Version 4.0 (35,912 70mer oligonucleotides) Keywords = spotted Keywords = mouse Keywords = long oligonucleotide Keywords = oligo Keywords = 70mer Keywords = Operon
16 GPL7467 MPIP24K 24,192 German Research Center for Environmental Health 2008-10-10 MPI of Psychiatry, Munich Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, MPIP24K,
17 GPL6753 Illumina mouseRef-8 v1.0 expression beadchip 24,056 German Research Center for Environmental Health 2008-04-18 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Illumina mouseRef-8 v1.0 expression beadchip, The Mouse-8 BeadChip can be used to study expression of over 24,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 8 samples in parallel on a single BeadChip.
18 GPL4937 GSF/IEG mouse 21K array (+RZPD) 20,794 Helmholtz Zentrum München, German Research Center for Environmental Health 2007-03-07 IEG, Gene regulation and Expression Profiling Group Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, GSF/IEG mouse 21K array (+RZPD), GSF/IEG mouse 21K (additionally RZPD)
19 GPL1800 University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003 20,636 University of Goettingen 2005-01-20 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003, Preparation of high-density cDNA microarrays. PCR-based cDNA amplification (Hedge et al., 2000 PMID: 10997270) was used to generate DNA from a murine cDNA clone library (Mouse Unigene Set RZPD 2) purchased from the RZPD (http://www.rzpd.de). This murine library contained 21,826 non-redundant clones from diverse tissues. After fully automated PCR-amplification and ultrafiltration-based purification using a Beckman-Coulter cDNA-production unit, control gel electrophoresis was perfomed showing that 95% of the products were clonally amplified. Non clonal or failed PCR-products were excluded from data analysis. The PCR-products were spotted on epoxy-coated glass slides (Schott Nexterion) using the BioRad spotter "Virtek Chip-Writer Pro" with 48 split pins (purchased from Telechem, www.arrayit.com). The arrays were prepared for hybridisation using surface blocking as described by the slide manufacturer. Keywords = cDNA, microarray, spotted, PCR-products
20 GPL1413 GSF mouse array 20,419 GSF - National Research Center 2004-08-23 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, GSF mouse array, cDNA array of commercially available set of 20.400 clones (Mus musculus) and specific mouse genes spotted on aldehyde coated slides.
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