Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(35)
  Primates
(0)
  Rodents
(23)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(3)
  Plants
(49)
  Bacteria
(1)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(119)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(3)
  Tiling Array
(1)
  cDNA Array
(8)
  Oligo Array
(10)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(23)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9485 NimbleGen Mouse MM8 Deluxe Promoter Array 2,137,504 Lund University 2009-10-23 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mouse MM8 Deluxe Promoter Array, 182007-09-21_MM8_Deluxe_Promoter_HX1
2 GPL7878 ohlsson_mm6_dedicated 389,353 Karolinska Institute 2008-12-20 NimbleGen Inc. Mus musculus
Mus musculus
Tiling Array spotted oligonucleotide, ohlsson_mm6_dedicated, Customized tiling array was designed based on our genome-wide 4C screening (data not uploaded) for mm6 assembly of mouse genome.
3 GPL16116 MoEx-1_0-st Mus musculus ENSE version 14 330,190 Karolinska Institute 2012-09-28 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, MoEx-1_0-st Mus musculus ENSE version 14,
4 GPL8833 Lund Strategic Center Mouse Illumina Expression Chip V6.1.1 46,657 Lund Strategic Center for Stem Cell Biology and Cell Therapy 2009-07-08 Illumina Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Lund Strategic Center Mouse Illumina Expression Chip V6.1.1,
5 GPL6538 Alternative Mouse Exon 1.0 ST Array [CDF: MmEx10stv1_Mm_REFSEQ_8] 43,029 Karolinska Institutet 2008-02-28 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, Alternative Mouse Exon 1.0 ST Array [CDF: MmEx10stv1_Mm_REFSEQ_8], Custom CDF linked to this submission as a supplementary file
6 GPL13421 SWEGENE mouseV4_37K_withControls 37,632 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2011-04-18 Swegene DNA Microarray Resource Centre Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, SWEGENE mouseV4_37K_withControls,
7 GPL1440 LUNDNIH_Mouse_37K_1 37,632 Lund University 2004-09-09 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, LUNDNIH_Mouse_37K_1, Mouse cDNA 37K
8 GPL1441 LUNDNIH_Mouse_37K_2 37,632 Lund University 2004-09-09 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, LUNDNIH_Mouse_37K_2, Mouse cDNA 37K
9 GPL14004 Swegene Mouse 36k oligo array (Operon libraries Version 4.0) 35,709 Lund University 2011-07-30 Swegene DNA Microarray Resource Center, Department of Oncology, Lund University, Sweden (http://swegene.onk.lu.se) Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Swegene Mouse 36k oligo array (Operon libraries Version 4.0), Mouse array-ready oligonucleotide libraries Version 4.0 from Operon (Operon Biotechnologies, Germany)
10 GPL6528 Rat Oligo array V3.0.5 27648 spots 27,648 Karolinska Institute 2008-02-26 KTH Microarray Center Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, Rat Oligo array V3.0.5 27648 spots, Spotted 27K oligonucleotide microarrays. 70 mer gene specific oligonucleotide probes from Operon Rattus Norvegicus AROSv3.0.5
11 GPL10853 NimbleGen Mouse 27K 4C-H19ICR Enriched Loci 26,934 Karolinska Institute 2010-08-24 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mouse 27K 4C-H19ICR Enriched Loci, MM9 2006-05-22_MM6_custom_50mer_ChIP
12 GPL14757 Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mouse4302_Mm_REFSEQ_v11] 21,940 Karolinska Institutet 2011-10-18 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mouse4302_Mm_REFSEQ_v11], This is identical to GPL1261 but a custom CDF environment was used to extract data [Brainarray Version 11.0.1, Mouse4302_Mm_REFSEQ].
13 GPL15508 arrayTAG LION Bioscience cDNA array 20,352 Lund University 2012-04-30 Max Planck Institute for Molecular Genetics, Berlin, Germany Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, arrayTAG LION Bioscience cDNA array, spotted PCR products
14 GPL14003 PGA Mouse chip 20K oligo array, version 1.1 19,549 Lund University 2011-07-30 DNA core facility, Center for Computational and Integrative Biology, Massachusetts General Hospital Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, PGA Mouse chip 20K oligo array, version 1.1,
15 GPL6303 Angio Chip Microarray 16,896 Karolinska Institute 2007-12-20 AngioGenetics Sweden AB Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, Angio Chip Microarray, The Angio Chip is a high-density (16K) custom cDNA microarray
16 GPL1751 NIH 15k clone collection/Ontario Cancer Institute 15,249 Karolinska Institutet 2004-12-16 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, NIH 15k clone collection/Ontario Cancer Institute, NIH 15k mouse clone collection spotted by Ontario Cancer Institute
17 GPL1006 Mouse 13.4K long oligonucleotide array (Operon) 13,872 Lund University 2004-02-20 Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Mouse 13.4K long oligonucleotide array (Operon), The Operon version 1.1 oligonucleotide probe set (70-mers) was printed in the Massachusetts General Hospital microarray core facility using an OmniGrid 100 (GeneMachines) on CodeLink activated slides (Amersham). Oligos were printed in 150 mM sodiumphosphate pH 8.5 with 0.0005% N-lauroyl sarcosine. Oligos were coupled to the activated slides by allowing the aminolinker on the oligos to react over night in a humidity chamber. Unreacted groups on the slide surface were blocked with 150 mM glycine, 0.1 M tris, 0.1% N-lauroyl sarcosine, pH 9. Keywords = spotted, long oligonucleotide, Operon
18 GPL1226 Mouse 13.4K long oligonucleotide array (Operon) 9.10.2002v2 13,872 Lund University 2004-05-10 Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Mouse 13.4K long oligonucleotide array (Operon) 9.10.2002v2, The Operon version 1.1 oligonucleotide probe set (70-mers) was printed in the Massachusetts General Hospital microarray core facility using an OmniGrid 100 (GeneMachines) on CodeLink activated slides (Amersham). Oligos were printed in 150 mM sodiumphosphate pH 8.5 with 0.0005% N-lauroyl sarcosine. Oligos were coupled to the activated slides by allowing the aminolinker on the oligos to react over night in a humidity chamber. Unreacted groups on the slide surface were blocked with 150 mM glycine, 0.1 M tris, 0.1% N-lauroyl sarcosine, pH 9. Keywords = spotted, long oligonucleotide, Operon
19 GPL1921 Rat 6240 cDNA Chip 6,240 Karolinska Institute 2005-03-21 Rattus norvegicus
Rattus norvegicus
cDNA Array spotted DNA/cDNA, Rat 6240 cDNA Chip, A microarray containning 6240 rat probes. Probes are PCR amplified cDNA clones from multiple libraries. Keywords = rat cDNA
20 GPL541 6240 rat cDNA array 6,240 Karolinska Institute 2003-10-13 Rattus norvegicus
Rattus norvegicus
cDNA Array spotted DNA/cDNA, 6240 rat cDNA array, 6240 rat cDNA array
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