Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(6)
  SAGE RsaI
(1)
  SAGE Sau3A
(2)
  MPSS
(4)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(928)
  Bead Array
(63)
  Protein Array
(0)
  Antibody
(4)
  RT-PCR
(68)
  HT-Seq
(0)
  Other
(20)
  All
(1,907)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL8 Cerebellargenexp 897 RIKEN Brain Science Institute 2001-04-18 Mus musculus
Mus musculus
GeneChip spotted DNA/cDNA, Cerebellargenexp, The Affymetrix GeneChip Mu11K was used to analyze the gene expression profile in developing mouse cerebellum (two GeneChips per E18, P7, P14, P21, and P56) to assist in the understanding of the genetic basis of cerebellar development in mice. The analysis showed 81.6% (10,321/12,654) of the genes represented on the GeneChip were expressed in the postnatal cerebellum, and among those, 8.7% (897/10,321) were differentially expressed with more than a two-fold change in their maximum and minimum expression levels during the developmental time course. All of these 897 differentially expressed genes were listed in this platform. The explanation of gene function classification is as follows: CGDD (cellular growth, differentiation, and death), CLAM (carbohydrate, lipid, and amino acid metabolism), CSC (cell structure and communication), IMTN (intra/intercellular molecular transport and neurotransmission), NNM (nucleotide and nucleic acid metabolism), ST (signal transduction), and TTPM (transcription, translation, and protein modification). Keywords = cerebellum, postnatal development, high-density oligonucleotide array
2 GPL11 SAGE:10:NlaIII:Mus musculus 789,532 2001-06-04 Mus musculus
Mus musculus
SAGE NlaIII SAGE NlaIII, SAGE:10:NlaIII:Mus musculus,
3 GPL23 SAGE:10:NlaIII:Rattus norvegicus 190,885 2001-11-12 Rattus norvegicus
Rattus norvegicus
SAGE NlaIII SAGE NlaIII, SAGE:10:NlaIII:Rattus norvegicus,
4 GPL24 EOSS002A 39,114 Cambridge Institute for Medical Research 2001-11-15 Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, EOSS002A, Custom Affymetrix GeneChip designed by Eos Biotechnology Inc. to measure the expression of a large number of genes or ESTs on a single array. This is achieved by choosing those probes from within each set of 20 Affymetrix perfect match probes that show the least random fluctuation relative to the perceived specific hybridization over a wide ranging set of samples (Glynne et al. 2000). Experiments undertaken by Eos have revealed that the mismatch probes do not increase sensitivity or reproducibility (RJG and GG unpublished data). Consequently, each gene on the Eos array is represented by 6-8 perfect match probes, as opposed to 20 perfect match and 20 mismatch probes, increasing the number of genes for which expression can be assayed in parallel to >39,000.
5 GPL34 [MG_U74C] Affymetrix Murine Genome U74C Array 12,728 Affymetrix, Inc. 2002-01-17 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MG_U74C] Affymetrix Murine Genome U74C Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The MG-U74 version 1 set comprises three arrays representing over 36,000 mouse genes and ESTs. Keywords = high density oligonucleotide array
6 GPL32 [MG_U74A] Affymetrix Murine Genome U74A Array 12,654 Affymetrix, Inc. 2002-01-17 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MG_U74A] Affymetrix Murine Genome U74A Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
7 GPL33 [MG_U74B] Affymetrix Murine Genome U74B Array 12,636 Affymetrix, Inc. 2002-01-17 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MG_U74B] Affymetrix Murine Genome U74B Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The MG-U74 version 1 set comprises three arrays representing over 36,000 mouse genes and ESTs. Keywords = high density oligonucleotide array
8 GPL69 Mouse 9K UCLA 9,504 UCLA 2002-02-13 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, Mouse 9K UCLA, This is the mouse 9K platform from UCLA Microarray Core Facility. This platform fits axon output data including blank spots.
9 GPL81 [MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array 12,488 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 07, 2012: annotation table updated with netaffx build 32
10 GPL82 [MG_U74Bv2] Affymetrix Murine Genome U74B Version 2 Array 12,477 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MG_U74Bv2] Affymetrix Murine Genome U74B Version 2 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
11 GPL83 [MG_U74Cv2] Affymetrix Murine Genome U74 Version 2 Array 11,934 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MG_U74Cv2] Affymetrix Murine Genome U74 Version 2 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
12 GPL85 [RG_U34A] Affymetrix Rat Genome U34 Array 8,799 Affymetrix, Inc. 2002-02-19 Affymetrix Rattus norvegicus
Rattus norvegicus
GeneChip in situ oligonucleotide, [RG_U34A] Affymetrix Rat Genome U34 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 08, 2012: annotation table updated with netaffx build 32
13 GPL86 [RG_U34B] Affymetrix Rat Genome U34 Array 8,791 Affymetrix, Inc. 2002-02-19 Affymetrix Rattus norvegicus
Rattus norvegicus
GeneChip in situ oligonucleotide, [RG_U34B] Affymetrix Rat Genome U34 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
14 GPL87 [RG_U34C] Affymetrix Rat Genome U34 Array 8,789 Affymetrix, Inc. 2002-02-19 Affymetrix Rattus norvegicus
Rattus norvegicus
GeneChip in situ oligonucleotide, [RG_U34C] Affymetrix Rat Genome U34 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
15 GPL78 [Mu19KsubB] Affymetrix Murine 19K SubB Array 7,054 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [Mu19KsubB] Affymetrix Murine 19K SubB Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 21146 entries and was indexed 29-Jan-2002. Keywords = high density oligonucleotide array
16 GPL79 [Mu19KsubC] Affymetrix Murine 19K SubC Array 7,047 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [Mu19KsubC] Affymetrix Murine 19K SubC Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 21146 entries and was indexed 29-Jan-2002. Keywords = high density oligonucleotide array
17 GPL77 [Mu19KsubA] Affymetrix Murine 19K SubA Array 7,045 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [Mu19KsubA] Affymetrix Murine 19K SubA Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 21146 entries and was indexed 29-Jan-2002. Keywords = high density oligonucleotide array
18 GPL76 [Mu11KsubB] Affymetrix Murine 11K SubB Array 6,595 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [Mu11KsubB] Affymetrix Murine 11K SubB Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 13179 entries and was indexed 29-Jan-2002. Keywords = high density oligonucleotide array
19 GPL75 [Mu11KsubA] Affymetrix Murine 11K SubA Array 6,584 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [Mu11KsubA] Affymetrix Murine 11K SubA Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
20 GPL88 [RN_U34] Affymetrix Rat Neurobiology U34 Array 1,322 Affymetrix, Inc. 2002-02-19 Affymetrix Rattus norvegicus
Rattus norvegicus
GeneChip in situ oligonucleotide, [RN_U34] Affymetrix Rat Neurobiology U34 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
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