Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(6)		   SAGE RsaI
(1)		   SAGE Sau3A
(2)		   MPSS
(4)		   GeneChip
(133)		   Tiling Array
(141)		   cDNA Array
(403)		   Oligo Array
(857)		   Bead Array
(57)		   Protein Array
(0)		   Antibody
(2)		   RT-PCR
(50)		   HT-Seq
(79)		   Other
(13)		   All
(1,748)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16936 Agilent-015749 Rat ToxArrayIII ver.2 44Kx4 array 21,960 Chemicals Evaluation and Research Institute, Japan 2013-03-30 Agilent Technologies Rattus norvegicus
Rattus norvegicus		 Oligo Array in situ oligonucleotide, Agilent-015749 Rat ToxArrayIII ver.2 44Kx4 array,
2 GPL16815 454 GS FLX Titanium (Mus musculus) 0 2013-03-19 Mus musculus
Mus musculus		 HT Sequencing high-throughput sequencing, 454 GS FLX Titanium (Mus musculus),
3 GPL16790 AB 5500 Genetic Analyzer (Mus musculus) 0 2013-03-14 Mus musculus
Mus musculus		 HT Sequencing high-throughput sequencing, AB 5500 Genetic Analyzer (Mus musculus),
4 GPL16763 [Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array [CDF: Brainarray V.10, Mm430A_Mm_ENTREZG_v10] 12,175 Affymetrix, Inc. 2013-03-07 Affymetrix Mus musculus
Mus musculus		 GeneChip in situ oligonucleotide, [Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array [CDF: Brainarray V.10, Mm430A_Mm_ENTREZG_v10], This array is identical to GPL8321 but a custom, remapped CDF environment is used to extract data. This is version 10 of the remapped CDF. The CDF for various platforms can be found at the link below. For the CDF file based on Entrez Gene: For detailed description please see the paper and website.
5 GPL16759 Agilent-031184 Unrestricted_Mouse_miRNA_V16.0_Microarray 030835 (miRNA_ID version) 1,080 Harbin Medical University Cancer Hospital 2013-03-06 Agilent Technologies Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent-031184 Unrestricted_Mouse_miRNA_V16.0_Microarray 030835 (miRNA_ID version), all mouse and mouse viral miRNAs Arrays of this design have barcodes that begin with 16031184 or 2531184. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
6 GPL16743 Agilent-028383 SurePrint G3 Mouse Promoter Microarray 1x1M 969,354 Agilent Technologies 2013-03-04 Agilent Technologies Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent-028383 SurePrint G3 Mouse Promoter Microarray 1x1M, SurePrint G3 Mouse Promoter Microarray 1x1M The ID column represents the Agilent Probe Name.
7 GPL16739 SABiosciences TGFβ/BMP Signaling Pathway PCR array 96 Istituto Superiore di Sanità 2013-03-01 SABiosciences Mus musculus
Mus musculus		 RT-PCR RT-PCR, SABiosciences TGFβ/BMP Signaling Pathway PCR array, TGFβ/BMP Signaling Pathway PCR arrayPCR assay SABiosciences RT² Profiler panel of PCR assays.
8 GPL16733 NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design 2,138,023 University of Washington 2013-02-28 NimbleGen Systems Inc. Mus musculus
Mus musculus		 Tiling Array in situ oligonucleotide, NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design, Promoter tiling array using NimbleGen platform. Mouse MM8 build. Probe length 50-75bp isothermal. Tiled regions are 8200bp upstream and 3000bp downstream of 5 prime ends of genes as annotated in MM8.
9 GPL16616 Illumina HiSeq 2000 (Mus musculus x Mus spretus) 0 2013-02-11 Mus musculus x Mus spretus
Mus musculus x Mus spretus		 HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Mus musculus x Mus spretus),
10 GPL16617 Illumina Genome Analyzer IIx (Mus musculus x Mus spretus) 0 2013-02-11 Mus musculus x Mus spretus
Mus musculus x Mus spretus		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Mus musculus x Mus spretus),
11 GPL16605 NimbleGen_MM9_3x720K_Refseq_Promoter [090618_MM9_Refseq_Prom_ChIP] 714,900 EMBL 2013-02-07 Nimblegen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, NimbleGen_MM9_3x720K_Refseq_Promoter [090618_MM9_Refseq_Prom_ChIP],
12 GPL16598 Agilent-013490 Mouse Genome CGH Microarray 44A G4414A (Probe Name version) 42,503 Agilent Technologies 2013-02-05 Agilent Technologies Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent-013490 Mouse Genome CGH Microarray 44A G4414A (Probe Name version), Designed and validated for genome-wide profiling of DNA copy number changes, Agilents Mouse Genome CGH Microarray 44A is the only commercial product for high-resolution, genome-wide analyses of chromosomal abnormalities in cancer and other genetics diseases in this critical model organism. The microarray provides comprehensive genome-wide coverage with an emphasis on the most commonly studied genomic regions and cancer-related genes. It consists of over 43,000 60-mer oligonucleotide probes, empirically validated in multiple model systems, that span coding and noncoding sequences with an average spatial resolution of 35kb. Coupled with Agilents optimized assay protocols, this microarray allows researchers to identify and locate genetic alterations in this critical model organism with the highest resolution and precision. Arrays of this design have barcodes that begin with 16013490 or 2513490. The ID column represents the Agilent Probe name. A different version of this platform with the Agilent featire numbers in the ID column is assigned accession number GPL2884
13 GPL16570 [MoGene-2_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] 41,611 Affymetrix, Inc. 2013-01-30 Affymetrix Mus musculus
Mus musculus		 GeneChip in situ oligonucleotide, [MoGene-2_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 30, 2013: annotation table updated with netaffx build 33
14 GPL16538 SABiosciences Mouse Inflammatory Cytokines and Receptors PCR assay panel (PAMM-011D) 96 Health Canada 2013-01-23 SABiosciences Mus musculus
Mus musculus		 RT-PCR RT-PCR, SABiosciences Mouse Inflammatory Cytokines and Receptors PCR assay panel (PAMM-011D), SABiosciences pathway-specific PCR array for inflammatory cytokines and receptors
15 GPL16526 miRCURY LNATM microRNA Array, Exiqon 6th generation miRCURY LNA microRNA Array. 4,124 university of michigan 2013-01-18 Exiqon Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, miRCURY LNATM microRNA Array, Exiqon 6th generation miRCURY LNA microRNA Array.,
16 GPL16502 Mus musculus 0.3 K S01_GE2-v5_95_miRNA 349 NCI 2013-01-14 Frederick National Lab Laboratory Services Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Mus musculus 0.3 K S01_GE2-v5_95_miRNA,
17 GPL16490 ArrayStar Mouse LncRNA Microarray V1.0 7,633 The University of Texas M.D. Anderson Cancer Center 2013-01-10 Arraystar Mus musculus
Mus musculus		 cDNA Array spotted DNA/cDNA, ArrayStar Mouse LncRNA Microarray V1.0,
18 GPL16446 NimbleGen Mouse DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array [100718_MM9_CpG_Refseq_Prom_MeDIP] 712,932 NimbleGen Systems, Inc. 2013-01-03 NimbleGen Systems Inc. Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, NimbleGen Mouse DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array [100718_MM9_CpG_Refseq_Prom_MeDIP], Format: 3x720K Source: UCSC Build: MM9 Transcripts: 22,881 Promoters: 20,404 (Calculated based on transcription start sites. Any transcription start sites on the same strand closer than 500bp are assumed to be transcribed from the one promoter. For a complete list of transcripts whose promoters are covered on each array, please contact Roche NimbleGen technical support) Number of CpG Islands: 15,980
19 GPL16426 SA Biosciences Mouse lung gene expression array 45 Indiana University School of Medicine-Northwest 2012-12-24 Qiagen/SA Biosciences Mus musculus
Mus musculus		 RT-PCR RT-PCR, SA Biosciences Mouse lung gene expression array, Quantitative reverse transcription real-time PCR (qRT-PCR)
20 GPL16417 Illumina MiSeq (Mus musculus) 0 2012-12-20 Mus musculus
Mus musculus		 HT Sequencing high-throughput sequencing, Illumina MiSeq (Mus musculus),
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