Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(6)
  SAGE RsaI
(1)
  SAGE Sau3A
(2)
  MPSS
(4)
  GeneChip
(167)
  Tiling Array
(144)
  cDNA Array
(408)
  Oligo Array
(928)
  Bead Array
(63)
  Protein Array
(0)
  Antibody
(4)
  RT-PCR
(68)
  HT-Seq
(92)
  Other
(20)
  All
(1,907)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL18535 [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [CDF: MoGene10stv1_Mm_ENTREZG_16.0.0] 21,225 NCBI/NLM/NIH 2014-04-07 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [CDF: MoGene10stv1_Mm_ENTREZG_16.0.0],
2 GPL18480 Illumina HiSeq 1500 (Mus musculus) 0 2014-03-27 Mus musculus
Mus musculus
HT Sequencing high-throughput sequencing, Illumina HiSeq 1500 (Mus musculus),
3 GPL18469 Illumina HiSeq 1000 (Rattus norvegicus) 0 2014-03-26 Rattus norvegicus
Rattus norvegicus
HT Sequencing high-throughput sequencing, Illumina HiSeq 1000 (Rattus norvegicus),
4 GPL18466 3D-Gene Mouse miRNA V19_1.0.0 1,265 Toray Industries,Inc. 2014-03-25 TORAY Industries, Inc. Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, 3D-Gene Mouse miRNA V19_1.0.0,
5 GPL18447 IMP Genomics Mouse 53MM 23,126 CNIO 2014-03-21 IMP Genomics Mouse Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, IMP Genomics Mouse 53MM,
6 GPL18431 MRA-1002_miRMouse_17 1,144 CCMB 2014-03-17 LC Sciences Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, MRA-1002_miRMouse_17,
7 GPL18416 [Mouse430_2_ENST_13.0.0] Affymetrix GeneChip Mouse Genome 430 2.0 Array [Brainarray Version 13] 41,179 NCBI/NLM/NIH 2014-03-12 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [Mouse430_2_ENST_13.0.0] Affymetrix GeneChip Mouse Genome 430 2.0 Array [Brainarray Version 13], Based on Mouse430A2_Mm_ENST_13.0.0 CDF available from Brainarray: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/13.0.0/enst.asp
8 GPL18414 SABiosciences Rat Stem Cell Transcription Factors - RT2 Profiler PCR Array 96 McGill University 2014-03-12 SABiosciences Rattus norvegicus
Rattus norvegicus
RT-PCR RT-PCR, SABiosciences Rat Stem Cell Transcription Factors - RT2 Profiler PCR Array, SABiosciences RT² Profiler panel of PCR assays.
9 GPL18406 Agilent-026986 Custom Whole Genome Mouse 8x60k designed by Genotypic Technology Pvt. Ltd. Feature Number 62,976 Thrombosis Research Institute 2014-03-11 www.chem.agilent.com Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent-026986 Custom Whole Genome Mouse 8x60k designed by Genotypic Technology Pvt. Ltd. Feature Number,
10 GPL18404 Illumina HiSeq 1500 (Rattus norvegicus) 0 2014-03-11 Rattus norvegicus
Rattus norvegicus
HT Sequencing high-throughput sequencing, Illumina HiSeq 1500 (Rattus norvegicus),
11 GPL18398 Exiqon Mouse miRCURY 6th generation LNA microRNA array [Condensed ProbeID Version] 1,175 NCBI/NLM/NIH 2014-03-10 Exiqon, Vedbaek, Denmark Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Exiqon Mouse miRCURY 6th generation LNA microRNA array [Condensed ProbeID Version], miRCURY 6th generation LNAâ„¢ microRNA array
12 GPL18376 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array [CDF: Brainarray Mouse4302_Mm_ENTREZG_12.1.0] 16,331 University Heidelberg 2014-03-05 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array [CDF: Brainarray Mouse4302_Mm_ENTREZG_12.1.0], http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/12.1.0/entrezg.asp
13 GPL18360 NimbleGen Mouse DNA Methylation 385K CpG Island Plus RefSeq Promoter Array [2007-02-27_MM8_CpG_Island_Pro] 373,683 Imperial College 2014-02-28 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mouse DNA Methylation 385K CpG Island Plus RefSeq Promoter Array [2007-02-27_MM8_CpG_Island_Pro], Build MM8 Design 5313
14 GPL18359 Sabiosciences RT2 Profiler DNA Damage Signaling Pathway PCR Array 96 Johns Hopkins School of Medicine 2014-02-28 Sabiosciences Mus musculus
Mus musculus
RT-PCR RT-PCR, Sabiosciences RT2 Profiler DNA Damage Signaling Pathway PCR Array, RT-PCR assay SABiosciences RT² Profiler PCR Array System
15 GPL18312 Phalanx Mouse miRNA OneArray Ver 5 (miRBase Release 19) 1,253 Phalanx Biotech Inc 2014-02-20 Phalanx Biotech Inc Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Phalanx Mouse miRNA OneArray Ver 5 (miRBase Release 19),
16 GPL18311 Phalanx Rat miRNA OneArray Ver 5 (miRBase Release 19) 721 Phalanx Biotech Inc 2014-02-20 Phalanx Biotech Inc Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, Phalanx Rat miRNA OneArray Ver 5 (miRBase Release 19),
17 GPL18305 Applied Biosystems TaqMan Rodent MicroRNA Array A using the Megaplexâ„¢ RT Primers, Rodent Pool A 381 University of Illinois at Chicago 2014-02-19 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, Applied Biosystems TaqMan Rodent MicroRNA Array A using the Megaplexâ„¢ RT Primers, Rodent Pool A, FAM-based qPCR assay. FAM-based real-time PCR-based microRNA microarray.
18 GPL18252 TaqMan® Array Mouse Immune Panel 96 University of Manchester 2014-02-05 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, TaqMan® Array Mouse Immune Panel, 383-well TaqMan Low Density Array (TLDA)
19 GPL18243 [MOE430A_Mm_ENTREZG] Affymetrix Mouse Expression 430A Array [Brainarray Version 14.0.0] 12,315 NCBI/NLM/NIH 2014-02-03 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MOE430A_Mm_ENTREZG] Affymetrix Mouse Expression 430A Array [Brainarray Version 14.0.0],
20 GPL18233 [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [probe set (exon) version] 0 Affymetrix, Inc. 2014-01-29 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [probe set (exon) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
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