Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22)
  Primates
(0)
  Rodents
(13)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(12)
  Plants
(24)
  Bacteria
(25)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(106)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(2)
  Tiling Array
(4)
  cDNA Array
(3)
  Oligo Array
(4)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(13)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1097 Mouse Skeletal Muscle Array 223 University of Bern 2004-04-06 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, Mouse Skeletal Muscle Array, Nylon, custom-designed murine cDNA array produced by Clontech, BD Biosciences. The cDNA fragments (200-600 bp) are PCR-amplified using gene-specific primers, and are selected so that they lack repetitive elements and have minimal homology with other genes on the array.
2 GPL10992 MM6 385K Whole Genome Tiling array 388,352 University of Lausanne 2010-09-28 NimbleGen Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, MM6 385K Whole Genome Tiling array, mm6 genome assembly native array description file: 2005-06-03_MM6_WG_CGH.ndf native array description file: 2005-06-03_MM6_WG_CGH.pos
3 GPL11047 Custom CGH array tiling selected regions on MM6 [2007-04-16_MM6_GK_CGH] 384,846 University of Lausanne 2010-10-12 NimbleGen Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Custom CGH array tiling selected regions on MM6 [2007-04-16_MM6_GK_CGH], tiling of various regions on mm6, tiled every 10bp, selecting win50, int300 , max 5, mean 350bp, median 351 native array description file: 2007-04-16_MM6_GK_CGH.ndf native array description file: 2007-04-16_MM6_GK_CGH.pos
4 GPL13161 NimbleGen custom Mouse Top2β target gene tiling array (HD 2.1) 2,079,060 Friedrich Miescher Institute for Biomedical Research 2011-02-11 NimbleGen Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, NimbleGen custom Mouse Top2β target gene tiling array (HD 2.1), Genomic regions of potential Top2β target genes from mm9, isothermal tiling oligos at 100bp
5 GPL13253 MM9 DNAMeth_HX1 2,079,060 Friedrich Miescher Institute for Biomedical Research 2011-03-07 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, MM9 DNAMeth_HX1, mm9 native array description file: 080430_MM9_Roloff_DNAMeth_HX1.ngd native array description file: 080430_MM9_Roloff_DNAMeth_HX1.pos
6 GPL14183 Mus musculus HoxD cluster tiling PRNFGMm2b520462F 0 EPFL 2011-08-23 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, Mus musculus HoxD cluster tiling PRNFGMm2b520462F,
7 GPL18163 NimbleGen Mouse DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array [090618_MM9_CpG_Refseq_Prom_MeDIP] 0 University of Zurich 2014-01-13 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mouse DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array [090618_MM9_CpG_Refseq_Prom_MeDIP], Format:3x720K Source: UCSC Build: Hg18, NCBI 36 Probe Length: 50-75mer Median Probe Spacing: 2509bp
8 GPL4371 UNI Lausanne Mouse 17K 17,664 UNI Lausanne 2006-09-27 DAFL - UNIL -CH Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, UNI Lausanne Mouse 17K,
9 GPL5008 Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mm_ENTREZG_8] 16,642 University of Basel 2007-03-16 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mm_ENTREZG_8], CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. After probe sequences are BLASTed against the latest UniGene Build and genome sequence, a series of filtering and grouping criteria are applied for different CDF files. For the CDF file based on Entrez Gene: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon; For detailed description please see the paper.
10 GPL6962 University of Lausanne Mouse 17K (M17K) array version 1 17,664 University of Lausanne 2008-06-16 DAFL (DNA Array Facility of the University of Lausanne) Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, University of Lausanne Mouse 17K (M17K) array version 1,
11 GPL7396 Mouse Toll-Like Receptor Signaling Pathway Microarray RT² Profiler™ PCR Array 96 University Hospital Zurich 2008-09-29 SA Biosciences, SuperArray Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Mouse Toll-Like Receptor Signaling Pathway Microarray RT² Profiler™ PCR Array,
12 GPL8059 Mouse Genome 430 2.0 Array [Mm430_Mm_REFSEQ (v10) CDF] 21,625 University of Zurich 2009-01-12 Affymetrix Mus musculus
Mus musculus
GeneChip spotted oligonucleotide, Mouse Genome 430 2.0 Array [Mm430_Mm_REFSEQ (v10) CDF],
13 GPL8086 Agilent Mouse Genome CGH Microarray 44K (015028) 42,404 ETH Zurich 2009-01-16 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent Mouse Genome CGH Microarray 44K (015028), NCBI Build 36