Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(103)
  Primates
(0)
  Rodents
(40)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(76)
  Bacteria
(73)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(394)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(7)
  Oligo Array
(22)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(2)
  Other
(0)
  All
(40)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10099 MIT M. Musculus Promoter array 44K 40,347 Massachusetts Institute of Technology 2010-02-24 www.agilent.com Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, MIT M. Musculus Promoter array 44K,
2 GPL10011 HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0 5,002 Medical Research Council 2010-02-04 University of Liverpool Microarray Facility Mus musculus
Mus musculus
Tiling Array spotted oligonucleotide, HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0, Tiling path array of oligos on HoxB and HoxD clusters :1 oligo / 250 bp in the core region containing the Hox genes,1 oligo / 500 bp in the flanking regions,1 oligo / 50kb outside flanking regions.These tiling oligos are designed alternatively on each strand. The position number (NCBI built m35) in the files is the 5’ base for the forward oligos and the 3’ for the reverse oligos (so one given oligo and the corresponding reverse oligo have the same position number). Other regions on the array are:Oct4 exons, promoter, flanking regions with low resolution,Sox2 exons, promoter, flanking regions with low resolution, Nanog exons, promoter. Control genes for array are; Ncl : exons, promoter, flanking regions with low resolution, RPL19 exons, Rrm2 exons, HPRT exons, promoter, c-myc, exons and other regions contains MAR and CTCF binding sites, Hbb-b1 exons and regulatory elements, Cdkn1a exons, promoter and regulatory elements, Oprk1 exons and regulatory elements and Mouse major and minor satellite DNA. Mismatch control oligos are the same as the oligos in exons but containing 1, 3, 5,7 ,10 mismatches. (NB : the Ncl mismatch oligos have been designed on the wrong strand). Other control probes are NM_000015.1 and Drosophila sequences.
3 GPL10016 UHN Mouse 22.4k mouse cDNA array 22,656 University of Pune 2010-02-05 University Health Network, Canada Microarray Centre Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, UHN Mouse 22.4k mouse cDNA array,
4 GPL9906 UCSF Mouse BAC 3K array 2,896 University of California at San Francisco 2010-01-13 UCSF Cancer Research Institute Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, UCSF Mouse BAC 3K array, The clones are ordered by position in the genome (UCSC draft genome sequence, May 2004 freeze) beginning at chromosome 1 and ending with chromosome X.
5 GPL9967 3D-Gene Mouse miRNA Oligo chip v13.0 728 Toray Industries,Inc. 2010-01-24 TORAY Industreies, Inc. Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, 3D-Gene Mouse miRNA Oligo chip v13.0,
6 GPL10012 SuperArray Oligo GEArray® Mouse Angiogenesis Microarray OMM-024 128 University of Pittsburgh 2010-02-04 SuperArray Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, SuperArray Oligo GEArray® Mouse Angiogenesis Microarray OMM-024, The Oligo GEArray® Mouse Angiogenesis Microarray profiles the expression of 113 key genes involved in modulating the biological processes of angiogenesis. This array includes the growth factors and receptors that play a role in angiogenesis. Also included are the adhesion molecules and matrix proteins involved as well as proteases and their inhibitors. Cytokines and chemokines related to angiogenesis are contained in the array along with transcription factors and other related genes.
7 GPL10013 SuperArray Oligo GEArray® Mouse Cancer PathwayFinder Microarray OMM-033 128 University of Pittsburgh 2010-02-04 SuperArray Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, SuperArray Oligo GEArray® Mouse Cancer PathwayFinder Microarray OMM-033, The Oligo GEArray® Mouse Cancer PathwayFinder™ Microarray profiles the expression of 113 genes representative of the six biological pathways involved in transformation and tumorigenesis listed below. Through a simple side-by-side hybridization experiment you can simultaneously determine which of the 6 pathways is involved in your experimental treatment.
8 GPL10052 SMD Print_982 Mus musculus 43,008 Stanford Microarray Database (SMD) 2010-02-16 Stanford Functional Genomics Facility, Stanford School of Medicine Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, SMD Print_982 Mus musculus,
9 GPL9943 SMD Print_1149 Mus musculus 40,704 Stanford University 2010-01-16 Stanford Functional Genomics Facility, Stanford School of Medicine Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, SMD Print_1149 Mus musculus,
10 GPL10121 The Oligo GEArray® Mouse Diabetes Microarray OMM-023 128 Stanford University 2010-03-02 SABiosciences: a QIAGEN company Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, The Oligo GEArray® Mouse Diabetes Microarray OMM-023, Catalog Number: OMM-0230-200807 The Oligo GEArray® Mouse Diabetes Microarray profiles the expression of 84 genes related to the onset, development, and progression of diabetes. They include genes that contribute to obesity, insulin resistance, the early onset of diabetes, and complications from diabetes mellitus. These genes are grouped into six functional categories: receptors, transporters and channels; nuclear receptors; metabolic enzymes; secreted factors; signal transduction proteins; and transcription factors. Many of the genes included have a tissue-specific or tissue-biased expression pattern which can also be affected by different pathophysiological states. This array can be used to study models of obesity and diabetes, to screen for therapeutics and their targets, and to profile the effect of various epidemiological and environmental factors on gene expression in various tissues or cell lines. Through a simple side-by-side hybridization experiment you can determine differential gene expression between your samples with this array.
11 GPL9853 Oligo GEArray, Mouse Inflammatory Cytokines & Receptors Microarray. 128 University of Illinois at Chicago 2010-01-04 SABiosciences Corporation, 6951 Executive Way, Frederick, MD 21703, USA. Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Oligo GEArray, Mouse Inflammatory Cytokines & Receptors Microarray., An oligonucleotide array representing 113 murine inflammation-related genes (from SA Biosciences at www.sabiosciences.com, Cat. Number OMM-011.) The array is a nylon membrane based DNA microarray on which 60-mer oligonucleotides probes were printed.
12 GPL10006 RT2 miRNA Mouse Genome PCR Array 384 National Center for Toxicological Research 2010-02-03 SABiosciences Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, RT2 miRNA Mouse Genome PCR Array,
13 GPL9899 NimbleGen Mouse 2006-08-03_MM8_60mer_expr tiling design 389,307 Fred Hutchinson Cancer Research Center 2010-01-11 NimbleGen Systems Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, NimbleGen Mouse 2006-08-03_MM8_60mer_expr tiling design, Expression tiling array using NimbleGen platform. Mouse MM8 build (NCBI Build 36), 60mer probes, 9 probes/target, 42,586 gene targets.
14 GPL9991 Hubrecht Rat 2.1M HX1 2,142,096 Hubrecht Institute 2010-01-29 NimbleGen Rattus norvegicus
Rattus norvegicus
Oligo Array in situ oligonucleotide, Hubrecht Rat 2.1M HX1, Genome assembly: RGSC3.4 native array description file: 080616_Cuppen_rat34_WG_CGH_HX1.ndf native array description file: 080616_Cuppen_rat34_WG_CGH_HX1.pos
15 GPL10129 NimbleGen Mouse 2.1 M array 10 of 10 2,101,973 University of Washington 2010-03-03 NimbleGen Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, NimbleGen Mouse 2.1 M array 10 of 10, 2007-07-27_MM8_TILE_ChIP_10_HX1 Annotation in this record based on NCBI mouse build 36. Regions of potential H3K27me3 target genes from mm8, isothermal tiling oligos at 100bp
16 GPL10192 NimbleGen Mus musculus MM9 Expression Array (12x135k) 44,170 NimbleGen Systems, Inc. 2010-03-17 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mus musculus MM9 Expression Array (12x135k), NimbleGen design name 090901_MM9_EXP_HX12. This is a whole mus musculus genome array in 12-plex format provided by nimblegen. See manufacturer's website at http://www.nimblegen.com/.
17 GPL9988 PGA/MGH mouse v1.1 oligonucleotide array 21,167 Dublin City University 2010-01-28 Massachusetts General Hospital Microarray Core facility Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, PGA/MGH mouse v1.1 oligonucleotide array,
18 GPL10025 BCBC Mouse PancChip 4.0 Array 11,736 Penn Center for Bioinformatics 2010-02-10 Klaus Kaestner Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, BCBC Mouse PancChip 4.0 Array, array containing probes representing mostly genes expressed in the pancreas
19 GPL10242 Illumina Mouse Ref-6 V1 46,643 Univ of Alabama at Birmingham 2010-03-23 Illumina, Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Illumina Mouse Ref-6 V1, Approximately 46,000 RefSeq and EST transcripts are present on the array in the form of oligo-coated (50mer) beads.
20 GPL10239 Illumina Rat Ref-12 v1 22,517 Univ of Alabama at Birmingham 2010-03-23 Illumina, Inc. Rattus norvegicus
Rattus norvegicus
Bead Array oligonucleotide beads, Illumina Rat Ref-12 v1, Approximately 22,000 RefSeq and EST transcripts are present on the arrays in the form of oligo-coated (50mer) beads.
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