Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(102)

Rodents
(40)

Phages
(0)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Protein Array
(0)

Antibody
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RT-PCR
(1)

HT-Seq
(2)

Other
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All
(40)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL10099	MIT M. Musculus Promoter array 44K	40,347	Massachusetts Institute of Technology	2010-02-24	www.agilent.com	Mus musculus	Oligo Array	in situ oligonucleotide, MIT M. Musculus Promoter array 44K,
2	GPL10011	HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0	5,002	Medical Research Council	2010-02-04	University of Liverpool Microarray Facility	Mus musculus	Tiling Array	spotted oligonucleotide, HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0, Tiling path array of oligos on HoxB and HoxD clusters :1 oligo / 250 bp in the core region containing the Hox genes,1 oligo / 500 bp in the flanking regions,1 oligo / 50kb outside flanking regions.These tiling oligos are designed alternatively on each strand. The position number (NCBI built m35) in the files is the 5Ã¢â‚¬â„¢ base for the forward oligos and the 3Ã¢â‚¬â„¢ for the reverse oligos (so one given oligo and the corresponding reverse oligo have the same position number). Other regions on the array are:Oct4 exons, promoter, flanking regions with low resolution,Sox2 exons, promoter, flanking regions with low resolution, Nanog exons, promoter. Control genes for array are; Ncl : exons, promoter, flanking regions with low resolution, RPL19 exons, Rrm2 exons, HPRT exons, promoter, c-myc, exons and other regions contains MAR and CTCF binding sites, Hbb-b1 exons and regulatory elements, Cdkn1a exons, promoter and regulatory elements, Oprk1 exons and regulatory elements and Mouse major and minor satellite DNA. Mismatch control oligos are the same as the oligos in exons but containing 1, 3, 5,7 ,10 mismatches. (NB : the Ncl mismatch oligos have been designed on the wrong strand). Other control probes are NM_000015.1 and Drosophila sequences.
3	GPL10016	UHN Mouse 22.4k mouse cDNA array	22,656	University of Pune	2010-02-05	University Health Network, Canada Microarray Centre	Mus musculus	cDNA Array	spotted DNA/cDNA, UHN Mouse 22.4k mouse cDNA array,
4	GPL9906	UCSF Mouse BAC 3K array	2,896	University of California at San Francisco	2010-01-13	UCSF Cancer Research Institute	Mus musculus	cDNA Array	spotted DNA/cDNA, UCSF Mouse BAC 3K array, The clones are ordered by position in the genome (UCSC draft genome sequence, May 2004 freeze) beginning at chromosome 1 and ending with chromosome X.
5	GPL9967	3D-Gene Mouse miRNA Oligo chip v13.0	728	Toray Industries,Inc.	2010-01-24	TORAY Industreies, Inc.	Mus musculus	Oligo Array	spotted oligonucleotide, 3D-Gene Mouse miRNA Oligo chip v13.0,
6	GPL10012	SuperArray Oligo GEArrayÃ‚Â® Mouse Angiogenesis Microarray OMM-024	128	University of Pittsburgh	2010-02-04	SuperArray	Mus musculus	Oligo Array	spotted oligonucleotide, SuperArray Oligo GEArrayÃ‚Â® Mouse Angiogenesis Microarray OMM-024, The Oligo GEArrayÃ‚Â® Mouse Angiogenesis Microarray profiles the expression of 113 key genes involved in modulating the biological processes of angiogenesis. This array includes the growth factors and receptors that play a role in angiogenesis. Also included are the adhesion molecules and matrix proteins involved as well as proteases and their inhibitors. Cytokines and chemokines related to angiogenesis are contained in the array along with transcription factors and other related genes.
7	GPL10013	SuperArray Oligo GEArrayÃ‚Â® Mouse Cancer PathwayFinder Microarray OMM-033	128	University of Pittsburgh	2010-02-04	SuperArray	Mus musculus	Oligo Array	spotted oligonucleotide, SuperArray Oligo GEArrayÃ‚Â® Mouse Cancer PathwayFinder Microarray OMM-033, The Oligo GEArrayÃ‚Â® Mouse Cancer PathwayFinderÃ¢â€žÂ¢ Microarray profiles the expression of 113 genes representative of the six biological pathways involved in transformation and tumorigenesis listed below. Through a simple side-by-side hybridization experiment you can simultaneously determine which of the 6 pathways is involved in your experimental treatment.
8	GPL10052	SMD Print_982 Mus musculus	43,008	Stanford Microarray Database (SMD)	2010-02-16	Stanford Functional Genomics Facility, Stanford School of Medicine	Mus musculus	cDNA Array	spotted DNA/cDNA, SMD Print_982 Mus musculus,
9	GPL9943	SMD Print_1149 Mus musculus	40,704	Stanford University	2010-01-16	Stanford Functional Genomics Facility, Stanford School of Medicine	Mus musculus	cDNA Array	spotted DNA/cDNA, SMD Print_1149 Mus musculus,
10	GPL10121	The Oligo GEArrayÃ‚Â® Mouse Diabetes Microarray OMM-023	128	Stanford University	2010-03-02	SABiosciences: a QIAGEN company	Mus musculus	Oligo Array	in situ oligonucleotide, The Oligo GEArrayÃ‚Â® Mouse Diabetes Microarray OMM-023, Catalog Number: OMM-0230-200807 The Oligo GEArrayÃ‚Â® Mouse Diabetes Microarray profiles the expression of 84 genes related to the onset, development, and progression of diabetes. They include genes that contribute to obesity, insulin resistance, the early onset of diabetes, and complications from diabetes mellitus. These genes are grouped into six functional categories: receptors, transporters and channels; nuclear receptors; metabolic enzymes; secreted factors; signal transduction proteins; and transcription factors. Many of the genes included have a tissue-specific or tissue-biased expression pattern which can also be affected by different pathophysiological states. This array can be used to study models of obesity and diabetes, to screen for therapeutics and their targets, and to profile the effect of various epidemiological and environmental factors on gene expression in various tissues or cell lines. Through a simple side-by-side hybridization experiment you can determine differential gene expression between your samples with this array.
11	GPL9853	Oligo GEArray, Mouse Inflammatory Cytokines & Receptors Microarray.	128	University of Illinois at Chicago	2010-01-04	SABiosciences Corporation, 6951 Executive Way, Frederick, MD 21703, USA.	Mus musculus	Oligo Array	spotted oligonucleotide, Oligo GEArray, Mouse Inflammatory Cytokines & Receptors Microarray., An oligonucleotide array representing 113 murine inflammation-related genes (from SA Biosciences at www.sabiosciences.com, Cat. Number OMM-011.) The array is a nylon membrane based DNA microarray on which 60-mer oligonucleotides probes were printed.
12	GPL10006	RT2 miRNA Mouse Genome PCR Array	384	National Center for Toxicological Research	2010-02-03	SABiosciences	Mus musculus	cDNA Array	spotted DNA/cDNA, RT2 miRNA Mouse Genome PCR Array,
13	GPL9899	NimbleGen Mouse 2006-08-03_MM8_60mer_expr tiling design	389,307	Fred Hutchinson Cancer Research Center	2010-01-11	NimbleGen Systems Inc.	Mus musculus	Tiling Array	in situ oligonucleotide, NimbleGen Mouse 2006-08-03_MM8_60mer_expr tiling design, Expression tiling array using NimbleGen platform. Mouse MM8 build (NCBI Build 36), 60mer probes, 9 probes/target, 42,586 gene targets.
14	GPL9991	Hubrecht Rat 2.1M HX1	2,142,096	Hubrecht Institute	2010-01-29	NimbleGen	Rattus norvegicus	Oligo Array	in situ oligonucleotide, Hubrecht Rat 2.1M HX1, Genome assembly: RGSC3.4 native array description file: 080616_Cuppen_rat34_WG_CGH_HX1.ndf native array description file: 080616_Cuppen_rat34_WG_CGH_HX1.pos
15	GPL10129	NimbleGen Mouse 2.1 M array 10 of 10	2,101,973	University of Washington	2010-03-03	NimbleGen	Mus musculus	Tiling Array	in situ oligonucleotide, NimbleGen Mouse 2.1 M array 10 of 10, 2007-07-27_MM8_TILE_ChIP_10_HX1 Annotation in this record based on NCBI mouse build 36. Regions of potential H3K27me3 target genes from mm8, isothermal tiling oligos at 100bp
16	GPL10192	NimbleGen Mus musculus MM9 Expression Array (12x135k)	44,170	NimbleGen Systems, Inc.	2010-03-17	NimbleGen	Mus musculus	Oligo Array	in situ oligonucleotide, NimbleGen Mus musculus MM9 Expression Array (12x135k), NimbleGen design name 090901_MM9_EXP_HX12. This is a whole mus musculus genome array in 12-plex format provided by nimblegen. See manufacturer's website at http://www.nimblegen.com/.
17	GPL9988	PGA/MGH mouse v1.1 oligonucleotide array	21,167	Dublin City University	2010-01-28	Massachusetts General Hospital Microarray Core facility	Mus musculus	Oligo Array	spotted oligonucleotide, PGA/MGH mouse v1.1 oligonucleotide array,
18	GPL10025	BCBC Mouse PancChip 4.0 Array	11,736	Penn Center for Bioinformatics	2010-02-10	Klaus Kaestner	Mus musculus	cDNA Array	spotted DNA/cDNA, BCBC Mouse PancChip 4.0 Array, array containing probes representing mostly genes expressed in the pancreas
19	GPL10242	Illumina Mouse Ref-6 V1	46,643	Univ of Alabama at Birmingham	2010-03-23	Illumina, Inc.	Mus musculus	Bead Array	oligonucleotide beads, Illumina Mouse Ref-6 V1, Approximately 46,000 RefSeq and EST transcripts are present on the array in the form of oligo-coated (50mer) beads.
20	GPL10239	Illumina Rat Ref-12 v1	22,517	Univ of Alabama at Birmingham	2010-03-23	Illumina, Inc.	Rattus norvegicus	Bead Array	oligonucleotide beads, Illumina Rat Ref-12 v1, Approximately 22,000 RefSeq and EST transcripts are present on the arrays in the form of oligo-coated (50mer) beads.

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