Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,747)		   Primates
(38)		   Rodents
(1,772)		   Mammals
(300)		   Vertebrates
(408)		   Invertebrates
(1,027)		   Plants
(2,220)		   Bacteria
(1,678)		   Viruses
(78)		   Phages
(8)		   Unclassified
(422)		   All
(11,747)		  
  SAGE NlaIII
(6)		   SAGE RsaI
(1)		   SAGE Sau3A
(2)		   MPSS
(4)		   GeneChip
(138)		   Tiling Array
(142)		   cDNA Array
(403)		   Oligo Array
(866)		   Bead Array
(57)		   Protein Array
(0)		   Antibody
(2)		   RT-PCR
(54)		   HT-Seq
(84)		   Other
(13)		   All
(1,772)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL89 [RT_U34] Affymetrix Rat Toxicology U34 Array 1,031 Affymetrix, Inc. 2002-02-19 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RT_U34] Affymetrix Rat Toxicology U34 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 1031 entries and was indexed 29-Jan-2002 Contains a relevant set of toxicology genes selected from published scientific literature and in collaboration with pharmaceutical toxicologists. Includes probes for >850 genes and EST clusters selected from Build 34 of the UniGene database. Specific full-length sequences were selected based on their known relevance to a toxic or stress-related response. EST clusters were selected basedon their homology to these known genes. UniGene clusters are analyzed by an exemplar sequence that is the most complete and most 3' sequence in the cluster. Keywords = high density oligonucleotide array
2 GPL88 [RN_U34] Affymetrix Rat Neurobiology U34 Array 1,322 Affymetrix, Inc. 2002-02-19 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RN_U34] Affymetrix Rat Neurobiology U34 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
3 GPL87 [RG_U34C] Affymetrix Rat Genome U34 Array 8,789 Affymetrix, Inc. 2002-02-19 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RG_U34C] Affymetrix Rat Genome U34 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
4 GPL86 [RG_U34B] Affymetrix Rat Genome U34 Array 8,791 Affymetrix, Inc. 2002-02-19 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RG_U34B] Affymetrix Rat Genome U34 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
5 GPL85 [RG_U34A] Affymetrix Rat Genome U34 Array 8,799 Affymetrix, Inc. 2002-02-19 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RG_U34A] Affymetrix Rat Genome U34 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 08, 2012: annotation table updated with netaffx build 32
6 GPL16251 [Rat230_2] Affymetrix Rat Genome 230 2.0 Array [CDF: Version 13.0.0, ENSG] 11,462 NCBI/NLM/NIH 2012-11-06 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [Rat230_2] Affymetrix Rat Genome 230 2.0 Array [CDF: Version 13.0.0, ENSG], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 07, 2012: annotation table updated with netaffx build 32
7 GPL1355 [Rat230_2] Affymetrix Rat Genome 230 2.0 Array 31,099 Affymetrix, Inc. 2004-07-20 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [Rat230_2] Affymetrix Rat Genome 230 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 07, 2012: annotation table updated with netaffx build 32
8 GPL17117 [RaGene-2_0-st] Affymetrix Rat Gene 2.0 ST Array [transcript (gene) version] 36,875 Affymetrix, Inc. 2013-05-06 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RaGene-2_0-st] Affymetrix Rat Gene 2.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Thu Mar 28 17:32:27 2013 PDT #%chip_type=RaGene-2_0-st-v1 #%lib_set_name=RaGene-2_0-st #%lib_set_version=v1 #%genome-species=Rattus norvegicus #%genome-version=rn4 #%genome-version-ucsc=rn4 #%genome-version-ncbi=Rnor3.4 #%genome-version-create_date=2004-11-00 #%genome-lifted_from-species=Rattus norvegicus #%genome-lifted_from-version-ucsc=rn4 #%genome-lifted_from-version-ncbi=Rnor3.4 #%netaffx-annotation-date=2012-09-30 #%netaffx-annotation-netaffx-build=33
9 GPL11534 [RaGene-1_1-st] Affymetrix Rat Gene 1.1 ST Array [transcript (gene) version] 29,214 Affymetrix, Inc. 2011-01-18 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RaGene-1_1-st] Affymetrix Rat Gene 1.1 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html RaGene-1_1-st-v1.na31.rn4.transcript.csv #%create_date=Fri Sep 17 11:36:51 2010 PDT #%chip_type=RaGene-1_1-st-v1 #%lib_set_name=RaGene-1_1-st #%lib_set_version=v1 #%genome-species=Rattus norvegicus #%genome-version=rn4 #%genome-version-ucsc=rn4 #%genome-version-ncbi=Rnor3.4 #%genome-version-create_date=2004-11-00 #%genome-lifted_from-species=Rattus norvegicus #%genome-lifted_from-version-ucsc=rn4 #%genome-lifted_from-version-ncbi=Rnor3.4 #%netaffx-annotation-date=2009-11-23 #%netaffx-annotation-netaffx-build=31
10 GPL6247 [RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [transcript (gene) version] 29,215 Affymetrix, Inc. 2007-12-05 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Wed Mar 11 16:20:04 2009 PDT #%chip_type=RaGene-1_0-st-v1 #%lib_set_name=RaGene-1_0-st #%lib_set_version=v1 #%genome-species=Rattus norvegicus #%genome-version=rn4 #%genome-version-ucsc=rn4 #%genome-version-ncbi=HGSC v3.4 #%genome-version-create_date=2004-11 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
11 GPL10741 [RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [probe set (exon) version] 213,067 Affymetrix, Inc. 2010-07-28 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [probe set (exon) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Tue Dec 8 17:34:30 2009 PST #%chip_type=RaGene-1_0-st-v1 #%lib_set_name=RaGene-1_0-st #%lib_set_version=v1 #%genome-species=Rattus norvegicus #%genome-version=rn4 #%genome-version-ucsc=rn4 #%genome-version-ncbi=HGSC v3.4 #%genome-version-create_date=2004-11 #%netaffx-annotation-date=2009-11-16 #%netaffx-annotation-netaffx-build=30.1
12 GPL6543 [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [transcript (gene) version] 361,289 Affymetrix, Inc. 2008-03-03 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Mon Mar 16 20:01:52 2009 PDT #%chip_type=RaEx-1_0-st-v1 #%lib_set_name=RaEx-1_0-st #%lib_set_version=v1 #%genome-species=Rattus norvegicus #%genome-version=rn4 #%genome-version-ucsc=rn4 #%genome-version-ncbi=HGSC v3.4 #%genome-version-create_date=2004-11 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
13 GPL6194 [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [probe set (exon) version] 1,064,901 Affymetrix, Inc. 2007-11-30 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [probe set (exon) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Mon Mar 16 20:01:52 2009 PDT #%chip_type=RaEx-1_0-st-v1 #%lib_set_name=RaEx-1_0-st #%lib_set_version=v1 #%genome-species=Rattus norvegicus #%genome-version=rn4 #%genome-version-ucsc=rn4 #%genome-version-ncbi=HGSC v3.4 #%genome-version-create_date=2004-11 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
14 GPL10112 [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [CDF: ENTREZG 10] 21,334 Duke-NUS 2010-02-26 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [CDF: ENTREZG 10], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
15 GPL342 [RAE230B] Affymetrix Rat Expression 230B Array 15,333 Affymetrix, Inc. 2003-06-19 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RAE230B] Affymetrix Rat Expression 230B Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Array B of GeneChip Rat Expression Set 230 Has 15333 entries and was indexed 09-Apr-2003 Sequences used in the design of the array were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from Build 99 of UniGene (June 2002) and refined by analysis and comparison with a number of other publicly available databases including the Baylor College of Medicine Human Genome Sequencing Center's preliminary rat genome assembly (June 2002). In addition, sequences were analyzed for untrimmed low-quality sequence information, correct orientation, false clustering, alternative splicing and alternative polyadenylation.
16 GPL341 [RAE230A] Affymetrix Rat Expression 230A Array 15,923 Affymetrix, Inc. 2003-06-19 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RAE230A] Affymetrix Rat Expression 230A Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
17 GPL11370 [olfactomw520640F] Custom Affymetrix olfactory genome tiling array 0 UCSF 2010-12-30 Affymetrix Mus musculus
Mus musculus		 Tiling Array in situ oligonucleotide, [olfactomw520640F] Custom Affymetrix olfactory genome tiling array, GeneChip CustomExpress format 49-7875 Olfactomw520640F
18 GPL1857 [Mu6500subA] Affymetrix Murine Genome 6500A Array 1,632 Affymetrix, Inc. 2005-02-08 Affymetrix Mus musculus
Mus musculus		 GeneChip in situ oligonucleotide, [Mu6500subA] Affymetrix Murine Genome 6500A Array, high density oligonucleotide array Keywords = oligonucleotide
19 GPL79 [Mu19KsubC] Affymetrix Murine 19K SubC Array 7,047 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus		 GeneChip in situ oligonucleotide, [Mu19KsubC] Affymetrix Murine 19K SubC Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 21146 entries and was indexed 29-Jan-2002. Keywords = high density oligonucleotide array
20 GPL78 [Mu19KsubB] Affymetrix Murine 19K SubB Array 7,054 Affymetrix, Inc. 2002-02-19 Affymetrix Mus musculus
Mus musculus		 GeneChip in situ oligonucleotide, [Mu19KsubB] Affymetrix Murine 19K SubB Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 21146 entries and was indexed 29-Jan-2002. Keywords = high density oligonucleotide array
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