Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(194)
  Primates
(1)
  Rodents
(34)
  Mammals
(7)
  Vertebrates
(4)
  Invertebrates
(12)
  Plants
(33)
  Bacteria
(44)
  Viruses
(1)
  Phages
(0)
  Unclassified
(4)
  All
(335)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(5)
  Oligo Array
(21)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(4)
  HT-Seq
(0)
  Other
(1)
  All
(34)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL5330 SAGE:17:NlaIII:Rattus norvegicus 47,273 2007-05-25 Rattus norvegicus
Rattus norvegicus
SAGE NlaIII SAGE NlaIII, SAGE:17:NlaIII:Rattus norvegicus, This is a virtual platform for SAGE libraries generated for Rattus norvegicus using NlaIII as an anchor enzyme.
2 GPL5126 TIGR_RAT_27k_cDNAarray_1 27,648 The George Washington University Medical Center 2007-04-25 The Institute for Genomic Research Rattus norvegicus
Rattus norvegicus
cDNA Array spotted DNA/cDNA, TIGR_RAT_27k_cDNAarray_1, The arrays are printed on the barcoded side of the slide with approximate distance from the top, left side and right side of 3 mm. The array consists of 48 grids with each grid representing 576 spots in a 24 x 24 arrangement.
3 GPL5091 10K CombiRat Array 23,040 University of New South Wales 2007-04-15 The Clive and Vera Ramaciotti Centre for Gene Function Analysis (CVRC), University of New South Wales, Australia Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, 10K CombiRat Array, Combined MWG and Compugen 10K glass slide spotted rat oligonucleotide-arrays were used. Each microarray slide consisted of 21,888 spots, including 10,752 probes and 192 control spots, printed in duplicate. The combined 5K Compugen and 5K MWG rat oligonucleotide probe sets dated back to 2002. The 5K Compugen (SigmaGenosys) consists of 65-mer oligos compared to 5K MWG has 50-mer oligo set.
4 GPL5424 GE Healthcare/Amersham Biosciences CodeLink UniSet Rat I Bioarray, layout EXP5280X2-584 10,455 Iconix Biosciences 2007-06-22 GE Healthcare/Amersham Biosciences Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, GE Healthcare/Amersham Biosciences CodeLink UniSet Rat I Bioarray, layout EXP5280X2-584, layout EXP5280X2-584
5 GPL5425 GE Healthcare/Amersham Biosciences CodeLink UniSet Rat I Bioarray, layout EXP5280X2-613 10,455 Iconix Biosciences 2007-06-22 GE Healthcare/Amersham Biosciences Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, GE Healthcare/Amersham Biosciences CodeLink UniSet Rat I Bioarray, layout EXP5280X2-613, layout EXP5280X2-613
6 GPL5426 GE Healthcare/Amersham Biosciences CodeLinkâ„¢ UniSet Rat I Bioarray, layout EXP5280X2-648 10,399 Iconix Biosciences 2007-06-22 GE Healthcare/Amersham Biosciences Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, GE Healthcare/Amersham Biosciences CodeLinkâ„¢ UniSet Rat I Bioarray, layout EXP5280X2-648, layout EXP5280X2-648
7 GPL5127 TIGR_RAT_target_oligoarray_1 409 The George Washington University Medical Center 2007-04-25 The Institute for Genomic Research Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, TIGR_RAT_target_oligoarray_1, The arrays are printed on the barcoded side of the slide with approximate distance from the top, left side and right side of 3 mm. The array consists of 48 grids with each grid representing 576 spots in a 24 x 24 arrangement.
8 GPL5119 SAGE:15:Sau3A:Mus musculus 213,528 2007-04-24 Mus musculus
Mus musculus
SAGE Sau3A SAGE Sau3A, SAGE:15:Sau3A:Mus musculus, This is a virtual platform for SAGE libraries generated for Mus musculus using Sau3A as an anchor enzyme.
9 GPL5449 CSMA [DpnII: Mus musculus] signature list 103,515 Solexa 2007-06-28 Mus musculus
Mus musculus
Other other, CSMA [DpnII: Mus musculus] signature list, Contains annotation and mapping information for canonical signatures Unigene Mm.151 and mouse genome sequence (mm7) were used for the annotation
10 GPL5402 Illumina Mouse 6x Beads-Chip 46,115 NCBI/NLM/NIH 2007-06-20 Illumina Inc. San Diego, California, USA Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Illumina Mouse 6x Beads-Chip, The Mouse-6 Expression BeadChip can be used in high-confidence studies to profile more than 47,000 well-annotated NCBI RefSeq transcripts per sample. Users can determine whole-genome expression profiles for 6 samples in parallel on one single BeadChip. The array is composed of 3 micron features with 30 times feature redundancy in average. All features are quality controlled by sequential DECODING hybridizations process. The length of the probes is. 50-100ng total RNA is required for each assay.
11 GPL5386 Mouse Small RNA 42K array 42,034 Best Institute 2007-06-13 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Mouse Small RNA 42K array, small RNA array
12 GPL5420 Mouse tRNA 42k array 42,034 Best Institute 2007-06-21 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Mouse tRNA 42k array, tRNA array
13 GPL5137 MEEBO Mus musculus Oligo 70mer Array V1.0 38,467 UCSF 2007-05-01 UCSF Center for Advanced Technology (CAT) Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, MEEBO Mus musculus Oligo 70mer Array V1.0,
14 GPL5371 AECOM 32K MOUSE OLIGONUCLEOTIDE ARRAY, MO2 printing series 33,600 Albert Einstein College of Medicine 2007-06-08 Microarray Facility of the Albert Einstein College of Medicine of Yeshiva University Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, AECOM 32K MOUSE OLIGONUCLEOTIDE ARRAY, MO2 printing series,
15 GPL5098 Micro-CRIBI Mouse 29K Oligo Array (Operon V1.1) 29,232 University of Padova 2007-04-18 Microcribi - Microarray Service (CRIBI - University of Padova) Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Micro-CRIBI Mouse 29K Oligo Array (Operon V1.1),
16 GPL5357 MWG Biotech MEEBO Long oligo array 27K 26,911 University of Missouri 2007-06-05 Division of Animal science, University of Missouri Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, MWG Biotech MEEBO Long oligo array 27K,
17 GPL5167 CAG Mouse 22k array v1.0 with Stratagene Spot Report Alien Oligo 23,232 PHRI-UMNDJ 2007-05-16 Center For Applied Genomics Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, CAG Mouse 22k array v1.0 with Stratagene Spot Report Alien Oligo,
18 GPL5438 LGTC Sigma-Compugen Mouse 22K V1n 23,232 Leiden University Medical Center 2007-06-27 LGTC Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, LGTC Sigma-Compugen Mouse 22K V1n,
19 GPL5083 Agilent 22K custom mouse gene expression array 1 of 2 22,575 University of Toronto 2007-04-13 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent 22K custom mouse gene expression array 1 of 2,
20 GPL5084 Agilent 22K custom mouse gene expression array 2 of 2 22,575 University of Toronto 2007-04-13 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent 22K custom mouse gene expression array 2 of 2,
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