Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(131)

Primates
(0)

Rodents
(70)

Phages
(0)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Tiling Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(3)

HT-Seq
(0)

Other
(0)

All
(70)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL15426	Agilent-035655 Mouse miRNA_v17	62,976	Zentrum fÃƒÂ¼r klinische Tiermedizin	2012-04-11	Agilent Technologies	Mus musculus	Oligo Array	in situ oligonucleotide, Agilent-035655 Mouse miRNA_v17, Mus musculus miRNAs MiRBase v17 (Agilent Arrays of this design have barcodes that begin with 16035655 or 2535655. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
2	GPL9079	GE Healthcare/Amersham Biosciences CodeLinkÃ¢â€žÂ¢ Mouse Whole Genome Bioarray (EMBL180809)	35,587	University of Rostock	2009-08-21	GE Healthcare	Mus musculus	Oligo Array	spotted oligonucleotide, GE Healthcare/Amersham Biosciences CodeLinkÃ¢â€žÂ¢ Mouse Whole Genome Bioarray (EMBL180809),
3	GPL13188	Operon OpArray - Mus Musculus - 38k v4.0.3	36,008	University of Regensburg	2011-02-17	Operon	Mus musculus	Oligo Array	spotted oligonucleotide, Operon OpArray - Mus Musculus - 38k v4.0.3,
4	GPL11066	EMBL/CodeLink Mouse 0.4K miCHIP v11	415	University of Heidelberg	2010-10-16	Array was spotted by the Genomics Core Facility, EMBL, Germany. LNA-modified capture probes were manufactured by Exiqon, Denmark.	Mus musculus	Oligo Array	spotted oligonucleotide, EMBL/CodeLink Mouse 0.4K miCHIP v11, miChip v11.0 annotation was done for mouse (miRBase v11.0). miChip array are spotted on CodeLink slides (GE Life Science, cat. no. 30001100). CodeLink glass slides are coated with N-hydroxysuccinimide. NOTE: Probe sequences used in this array are proprietary, belonging to Exiqon.
5	GPL9347	EMBL/CodeLink Mouse 0.4K miCHIP v9.2	415	University of Heidelberg	2009-10-05	Array were spotted by the Genomics Core Facility, EMBL, Germany. LNA-modified capture probes were manufactured by Exiqon, Denmark	Mus musculus	Oligo Array	spotted oligonucleotide, EMBL/CodeLink Mouse 0.4K miCHIP v9.2, miChip array are spotted on CodeLink, GE Life Science, cat. no. 30001100). Codelink glass slides are coated with N-hydroxysuccinimide NOTE: Probe sequences used in this array are proprietary, belonging to Exiqon.
6	GPL9352	EMBL/CodeLink Mouse 0.4K miCHIP V8.0	408	University of Heidelberg	2009-10-05	Array were spotted by the Genomics Core Facility, EMBL, Germany. LNA-modified capture probes were manufactured by Exiqon, Denmark	Mus musculus	Oligo Array	spotted oligonucleotide, EMBL/CodeLink Mouse 0.4K miCHIP V8.0, miChip v8.0 annotation was done for mouse; however miCHIP v8.0 (mouse) contains capture probe matching several human microRNAs that were not validated in mouse (miRBase v8.0). miChip array are spotted on CodeLink, GE Life Science, cat. no. 30001100). Codelink glass slides are coated with N-hydroxysuccinimide NOTE: Probe sequences used in this array are proprietary, belonging to Exiqon.
7	GPL9350	EMBL/CodeLink Rat 0.28K miCHIP v9.2	279	University of Heidelberg	2009-10-05	Array were spotted by the Genomics Core Facility, EMBL, Germany. LNA-modified capture probes were manufactured by Exiqon, Denmark	Rattus norvegicus	Oligo Array	spotted oligonucleotide, EMBL/CodeLink Rat 0.28K miCHIP v9.2, miChip array are spotted on CodeLink, GE Life Science, cat. no. 30001100). Codelink glass slides are coated with N-hydroxysuccinimide. NOTE: Probe sequences used in this array are proprietary, belonging to Exiqon.
8	GPL1800	University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003	20,636	University of Goettingen	2005-01-20		Mus musculus	cDNA Array	spotted DNA/cDNA, University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003, Preparation of high-density cDNA microarrays. PCR-based cDNA amplification (Hedge et al., 2000 PMID: 10997270) was used to generate DNA from a murine cDNA clone library (Mouse Unigene Set RZPD 2) purchased from the RZPD (http://www.rzpd.de). This murine library contained 21,826 non-redundant clones from diverse tissues. After fully automated PCR-amplification and ultrafiltration-based purification using a Beckman-Coulter cDNA-production unit, control gel electrophoresis was perfomed showing that 95% of the products were clonally amplified. Non clonal or failed PCR-products were excluded from data analysis. The PCR-products were spotted on epoxy-coated glass slides (Schott Nexterion) using the BioRad spotter "Virtek Chip-Writer Pro" with 48 split pins (purchased from Telechem, www.arrayit.com). The arrays were prepared for hybridisation using surface blocking as described by the slide manufacturer. Keywords = cDNA, microarray, spotted, PCR-products
9	GPL14006	Agilent-015028 Mouse Genome CGH Microarray 44K G4426B (ProbeName version), mm9	42,076	University Medical Center Hamburg-Eppendorf	2011-08-01	Agilent Technologies	Mus musculus	Oligo Array	in situ oligonucleotide, Agilent-015028 Mouse Genome CGH Microarray 44K G4426B (ProbeName version), mm9, Same physical array as GPL11288, but with updated annotation based on NCBI37/mm9 assembly.
10	GPL13502	Affymetrix GeneChip Mouse Genome 430 2.0 Array [AffyProbeMiner cdf (mouse4302geneccds) version 1.8.0]	16,384	University Medical Center Hamburg-Eppendorf	2011-05-06	Affymetrix	Mus musculus	GeneChip	in situ oligonucleotide, Affymetrix GeneChip Mouse Genome 430 2.0 Array [AffyProbeMiner cdf (mouse4302geneccds) version 1.8.0],
11	GPL8961	Eppendorf DualChip Mouse inflammation	300	University Medical Center Hamburg-Eppendorf	2009-07-31	Eppendorf AG, Hamburg, Germany	Mus musculus	cDNA Array	spotted DNA/cDNA, Eppendorf DualChip Mouse inflammation, No. of genes: 233 (including 10 housekeeping genes) No. of housekeeping genes: 10 No. of spots per gene: 3 Average spot size: 200 Ã‚Âµm Controls: housekeeping genes, positive/negative hybridization controls, positive/negative detection controls and internal controls for normalization
12	GPL8085	Murine custom chip-on-chip 244k oligo array (AMADID: 018915)	240,662	University Hospital Regensburg	2009-01-16	Agilent	Mus musculus	Oligo Array	in situ oligonucleotide, Murine custom chip-on-chip 244k oligo array (AMADID: 018915),
13	GPL8597	Affymetrix GeneChip Rat Genome 230 2.0 Array [CDF: Brainarray Version 11, Rn230_Rn_ENTREZG]	11,484	University hospital Mannheim	2009-05-27	Affymetrix	Rattus norvegicus	GeneChip	in situ oligonucleotide, Affymetrix GeneChip Rat Genome 230 2.0 Array [CDF: Brainarray Version 11, Rn230_Rn_ENTREZG],
14	GPL3240	Affymetrix GeneChip Rat Expression Set 230 Array RAE230A PM probes	175,477	University Heidelberg	2005-12-08	Affymetrix	Rattus norvegicus	GeneChip	in situ oligonucleotide, Affymetrix GeneChip Rat Expression Set 230 Array RAE230A PM probes,
15	GPL8462	Affymetrix Mouse Genome UG 430 2.0 Array [CDF: Mouse4302_Mm_UG_v11.cdf]	19,292	University Heidelberg	2009-04-21	Affymetrix	Mus musculus	GeneChip	in situ oligonucleotide, Affymetrix Mouse Genome UG 430 2.0 Array [CDF: Mouse4302_Mm_UG_v11.cdf], Custom CDF (Brainarray v11); UniGene
16	GPL6872	Affymetrix GeneChip Rat Genome 230 2.0 Array [CDF: Brainarray_Rn230_Rn_UG_v10.cdf]	18,698	University Heidelberg	2008-05-19	Affymetrix	Rattus norvegicus	GeneChip	in situ oligonucleotide, Affymetrix GeneChip Rat Genome 230 2.0 Array [CDF: Brainarray_Rn230_Rn_UG_v10.cdf], Custom CDF (Brainarray v10); UniGene build 165
17	GPL15041	[Mouse4302_Mm_EntrezG] Affymetrix GeneChip Mouse Genome 430 2.0 Array [Brainarray Version 14]	17,370	University Heidelberg	2011-12-19	Affymetrix	Mus musculus	GeneChip	in situ oligonucleotide, [Mouse4302_Mm_EntrezG] Affymetrix GeneChip Mouse Genome 430 2.0 Array [Brainarray Version 14],
18	GPL9746	Affymetrix GeneChip Mouse Genome 430 2.0 Array (CDF: Mouse4302_Mm_ENTREZG.cdf version 12.0.0)	16,395	University Heidelberg	2009-12-04	Affymetrix	Mus musculus	GeneChip	in situ oligonucleotide, Affymetrix GeneChip Mouse Genome 430 2.0 Array (CDF: Mouse4302_Mm_ENTREZG.cdf version 12.0.0), Custom CDF (Brainarray Entrez Gene v12.0.0)
19	GPL16277	UKD Gastroenterologie Mus musculus oligo array	288	UniversitÃƒÂ¤tsklinikum DÃƒÂ¼sseldorf	2012-11-14	[UKD Gastroenterologie]-[Gehrmann]	Mus musculus	Oligo Array	spotted oligonucleotide, UKD Gastroenterologie Mus musculus oligo array,
20	GPL9092	University of Goettingen, Custom Agilent Rat Immuno Microarray 8x15K G2509F (Feature Number Version)	15,744	Universitaetsmedizin Goettingen	2009-08-25	Agilent Technologies	Rattus norvegicus	Oligo Array	in situ oligonucleotide, University of Goettingen, Custom Agilent Rat Immuno Microarray 8x15K G2509F (Feature Number Version), Designed to represent all known genes from immunological processes in the rat genome and their resulting transcripts. Content for this microarray was generated from leading public databases.

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