Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(194)		   Primates
(1)		   Rodents
(34)		   Mammals
(7)		   Vertebrates
(4)		   Invertebrates
(12)		   Plants
(33)		   Bacteria
(44)		   Viruses
(1)		   Phages
(0)		   Unclassified
(4)		   All
(335)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(0)		   cDNA Array
(5)		   Oligo Array
(21)		   Bead Array
(1)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(4)		   HT-Seq
(0)		   Other
(1)		   All
(34)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL5456 NIAID_Mouse_16475_Mmbe-62-02 16,475 USUHS 2007-06-29 NIAID Microarray Research Facility Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, NIAID_Mouse_16475_Mmbe-62-02,
2 GPL5054 Swegene Mus musculus 1.7K array_Operon array-ready and custom oligos 1,687 University of Tromsoe 2007-04-02 Swegene Microarray Core Facility, Lund, Sweden Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Swegene Mus musculus 1.7K array_Operon array-ready and custom oligos,
3 GPL5083 Agilent 22K custom mouse gene expression array 1 of 2 22,575 University of Toronto 2007-04-13 Agilent Technologies Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent 22K custom mouse gene expression array 1 of 2,
4 GPL5084 Agilent 22K custom mouse gene expression array 2 of 2 22,575 University of Toronto 2007-04-13 Agilent Technologies Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent 22K custom mouse gene expression array 2 of 2,
5 GPL5370 Agilent Custom Mouse 44K Alternative Splicing Oligo Microarray 22,242 University of Toronto 2007-06-08 Agilent Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent Custom Mouse 44K Alternative Splicing Oligo Microarray, A microarray platform to profile alternative splicing levels for 3707 cassette-type alternative exons across a diverse spectrum of mouse tissues.
6 GPL5098 Micro-CRIBI Mouse 29K Oligo Array (Operon V1.1) 29,232 University of Padova 2007-04-18 Microcribi - Microarray Service (CRIBI - University of Padova) Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Micro-CRIBI Mouse 29K Oligo Array (Operon V1.1),
7 GPL5091 10K CombiRat Array 23,040 University of New South Wales 2007-04-15 The Clive and Vera Ramaciotti Centre for Gene Function Analysis (CVRC), University of New South Wales, Australia Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, 10K CombiRat Array, Combined MWG and Compugen 10K glass slide spotted rat oligonucleotide-arrays were used. Each microarray slide consisted of 21,888 spots, including 10,752 probes and 192 control spots, printed in duplicate. The combined 5K Compugen and 5K MWG rat oligonucleotide probe sets dated back to 2002. The 5K Compugen (SigmaGenosys) consists of 65-mer oligos compared to 5K MWG has 50-mer oligo set.
8 GPL5357 MWG Biotech MEEBO Long oligo array 27K 26,911 University of Missouri 2007-06-05 Division of Animal science, University of Missouri Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, MWG Biotech MEEBO Long oligo array 27K,
9 GPL5073 Applied Biosystems Customized TaqMan Low Density Array (Mouse) _ In vivo T cell gene expression 384 University of Birmingham 2007-04-09 Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems Customized TaqMan Low Density Array (Mouse) _ In vivo T cell gene expression, To probe T cell responses in vivo, naïve OVA-specific transgenic CD4 T (OTII) cells were transferred into normal mice and the chimeras were then immunized with specific forms of OVA driving either a Th1 or a Th2 type of immune responses. This was achieved respectively by following the response in the draining lymph node after immunizing subcutaneously, either with live attenuated Salmonella typhimurium engineered to express an OVA transgene, or alum-precipitated OVA. Virtual platform listing 384 in vivo T cell polarization-related candidate genes investigated using RT-PCR.
10 GPL5174 Applied Biosystems TaqMan mouse B cell_low density array 96 University of Birmingham 2007-05-18 Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems TaqMan mouse B cell_low density array, A custom designed low density TaqMan array.
11 GPL5145 UPMC_PACCM_MOUSE_20K_14 19,621 University of Tennessee Chattanooga 2007-05-05 General Electric/Amersham Biosciences Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, UPMC_PACCM_MOUSE_20K_14,
12 GPL5403 Mouse_Oligo_Ia_BMFZ 19,200 Universitaet Duesseldorf 2007-06-21 BMFZ Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Mouse_Oligo_Ia_BMFZ,
13 GPL5137 MEEBO Mus musculus Oligo 70mer Array V1.0 38,467 UCSF 2007-05-01 UCSF Center for Advanced Technology (CAT) Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, MEEBO Mus musculus Oligo 70mer Array V1.0,
14 GPL5065 VMSR Mus 20K version 2 20,847 UCLA 2007-04-04 Vanderbilt Microarray Shared Resources Mus musculus
Mus musculus		 cDNA Array spotted DNA/cDNA, VMSR Mus 20K version 2,
15 GPL5126 TIGR_RAT_27k_cDNAarray_1 27,648 The George Washington University Medical Center 2007-04-25 The Institute for Genomic Research Rattus norvegicus
Rattus norvegicus		 cDNA Array spotted DNA/cDNA, TIGR_RAT_27k_cDNAarray_1, The arrays are printed on the barcoded side of the slide with approximate distance from the top, left side and right side of 3 mm. The array consists of 48 grids with each grid representing 576 spots in a 24 x 24 arrangement.
16 GPL5127 TIGR_RAT_target_oligoarray_1 409 The George Washington University Medical Center 2007-04-25 The Institute for Genomic Research Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, TIGR_RAT_target_oligoarray_1, The arrays are printed on the barcoded side of the slide with approximate distance from the top, left side and right side of 3 mm. The array consists of 48 grids with each grid representing 576 spots in a 24 x 24 arrangement.
17 GPL5449 CSMA [DpnII: Mus musculus] signature list 103,515 Solexa 2007-06-28 Mus musculus
Mus musculus		 Other other, CSMA [DpnII: Mus musculus] signature list, Contains annotation and mapping information for canonical signatures Unigene Mm.151 and mouse genome sequence (mm7) were used for the annotation
18 GPL5167 CAG Mouse 22k array v1.0 with Stratagene Spot Report Alien Oligo 23,232 PHRI-UMNDJ 2007-05-16 Center For Applied Genomics Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, CAG Mouse 22k array v1.0 with Stratagene Spot Report Alien Oligo,
19 GPL5369 SMCmou8400A Mus musculus 8k cDNA array 8,272 OHSU 2007-06-08 Oregon Health and Science University Spotted Microarray Core Mus musculus
Mus musculus		 cDNA Array spotted DNA/cDNA, SMCmou8400A Mus musculus 8k cDNA array, Array format is 16 grids, with four rows (metarows) and four columns (metacolumns) of grids. Grids are 23 x 23. Each array was printed twice per slide. The array contains replicates of the Stratagene SpotReport 10 cDNA validation system. These are Arabidopsis thaliana genes that have no known homology to mammalian genes. The labels for these in the genelist are A.thaliana_Cab, A.thaliana_RCA, A.thaliana_rbcL, A.thaliana_LTP4, A.thaliana_LTP6, A.thaliana_XCP2, A.thaliana_RCP1, A.thaliana_NAC1, A.thaliana_TIM, and A.thaliana_PRKase. Included in the SpotReport material is also human_beta_actin. Genes not identified in the primarily library listing are noted as NoGeneID. Locations printed with only buffer are listed as LeftBlank.
20 GPL5339 Mm_FCRF_UniGEM2 9,984 NCI 2007-05-29 NCI-Frederick/LMT Mus musculus
Mus musculus		 cDNA Array spotted DNA/cDNA, Mm_FCRF_UniGEM2, The mouse cDNA probe set is based on 9984 PCR products from Incyte's mouse UniGEM 2.0 library (http://www.incyte.com).
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