Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(718)
  SAGE RsaI
(3)
  SAGE Sau3A
(37)
  MPSS
(100)
  GeneChip
(108,928)
  Tiling Array
(2,164)
  cDNA Array
(11,311)
  Oligo Array
(60,928)
  Bead Array
(21,037)
  Protein Array
(0)
  Antibody
(28)
  RT-PCR
(1,166)
  HT-Seq
(17,667)
  Other
(968)
  All
(225,055)
 
  brain
(32,747)
  blood
(26,065)
  connective
(14,480)
  reproductive
(8,338)
  muscular
(14,417)
  digestive
(5,405)
  liver
(35,571)
  lung
(10,598)
  urinary
(5,877)
  endo/exo-crine
(7,366)
  embryo
(10,361)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(10,334)
  unclassified
(43,496)
  all
(225,055)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1305761 Normal_Control_Pirc_rat11 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
2 GSM1305762 Normal_DSS_Pirc_rat12 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
3 GSM1305763 Normal_Control_WT_rat13 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
4 GSM1305764 Normal_DSS_WT_rat14 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
5 GSM1305765 Normal_Control_Pirc_rat15 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
6 GSM1305766 Normal_DSS_Pirc_rat16 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
7 GSM1305767 Normal_Control_WT_rat17 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
8 GSM1305768 Normal_DSS_WT_rat18 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
9 GSM1305769 Normal_Control_Pirc_rat19 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
10 GSM1305770 Normal_DSS_Pirc_rat20 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
11 GSM1305771 Normal_Control_WT_rat21 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
12 GSM1305772 Normal_DSS_WT_rat22 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
13 GSM1305773 Normal_Control_Pirc_rat23 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
14 GSM1305774 Normal_DSS_Pirc_rat24 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
15 GSM1305775 Normal_Control_WT_rat25 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
16 GSM1305776 Normal_DSS_WT_rat26 62,976 University of Wisconsin-Madison 2014-01-12 [Oligo Array] Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version) (GPL14797) RNA Rattus norvegicus
Rattus norvegicus
colon normal distal colon
17 GSM278717 Low calcium, Colon mucosa, HLAB27, repl 1 45,018 NIZO food research 2008-04-02 [Oligo Array] Agilent-014879 Whole Rat Genome Microarray 4x44K G4131F (Feature Number version) (GPL4135) RNA Rattus norvegicus
Rattus norvegicus
colon Colon mucosa, HLAB27, repl 1 Reference RNA. This consists of a pool of equal molar total RNA samples of all groups analyzed.
18 GSM278718 High calcium, Colon mucosa, HLAB27, repl 3 45,018 NIZO food research 2008-04-02 [Oligo Array] Agilent-014879 Whole Rat Genome Microarray 4x44K G4131F (Feature Number version) (GPL4135) RNA Rattus norvegicus
Rattus norvegicus
colon Colon mucosa, HLAB27, repl 3 Reference RNA. This consists of a pool of equal molar total RNA samples of all groups analyzed.
19 GSM278719 Low calcium, Colon mucosa, HLAB27, repl 4 45,018 NIZO food research 2008-04-02 [Oligo Array] Agilent-014879 Whole Rat Genome Microarray 4x44K G4131F (Feature Number version) (GPL4135) RNA Rattus norvegicus
Rattus norvegicus
colon Colon mucosa, HLAB27, repl 4 Reference RNA. This consists of a pool of equal molar total RNA samples of all groups analyzed.
20 GSM278720 Low calcium, Colon mucosa, HLAB27, repl 5 45,018 NIZO food research 2008-04-02 [Oligo Array] Agilent-014879 Whole Rat Genome Microarray 4x44K G4131F (Feature Number version) (GPL4135) RNA Rattus norvegicus
Rattus norvegicus
colon Colon mucosa, HLAB27, repl 5 Reference RNA. This consists of a pool of equal molar total RNA samples of all groups analyzed.
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