Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(19,660)		   Primates
(316)		   Rodents
(6,361)		   Mammals
(920)		   Vertebrates
(1,340)		   Invertebrates
(1,826)		   Plants
(2,098)		   Bacteria
(617)		   Viruses
(1)		   Phages
(0)		   Unclassified
(300)		   All
(33,523)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(3,057)		   Tiling Array
(91)		   cDNA Array
(74)		   Oligo Array
(1,268)		   Bead Array
(909)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(55)		   HT-Seq
(907)		   Other
(0)		   All
(6,361)		  
  brain
(984)		   blood
(1,264)		   connective
(249)		   reproductive
(270)		   muscular
(383)		   digestive
(93)		   liver
(545)		   lung
(285)		   urinary
(73)		   endo/exo-crine
(112)		   embryo
(245)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(311)		   unclassified
(1,547)		   all
(6,361)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM934826 5mC NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
2 GSM934827 5mC neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum methylated DNA fraction enriched by MIRA. DNA was isolated from neurons Input DNA from neurons
3 GSM934828 H3K27me3 NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
4 GSM934829 H3K27me3 neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum H3K27me3 ChIp DNA from neurons Input DNA from neurons
5 GSM934830 H3K4me3 NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
6 GSM934831 H3K4me3 neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum H3K4me3 ChIp DNA from neurons Input DNA from neurons
7 GSM934832 H3K36me3 NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
8 GSM934833 H3K36me3 neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum H3K36me3 ChIp DNA from neurons Input DNA from neurons
9 GSM934834 5hmC NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
10 GSM934835 5hmC neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum 5hmC enriched DNA fraction after pull-down with 5hmC antibodies. DNA was isolated from neurons Input DNA from neurons
11 GSM934885 5mC NPC 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
12 GSM934886 5mC neurons 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum methylated DNA fraction enriched by MIRA. DNA was isolated from neurons Input DNA from neurons
13 GSM934887 H3K27me3 NPC 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
14 GSM934888 H3K27me3 neurons 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum H3K27me3 ChIp DNA from neurons Input DNA from neurons
15 GSM934889 H3K4me3 NPC 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
16 GSM934890 H3K4me3 neurons 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum H3K4me3 ChIp DNA from neurons Input DNA from neurons
17 GSM934891 H3K36me3 NPC 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
18 GSM934892 H3K36me3 neurons 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum H3K36me3 ChIp DNA from neurons Input DNA from neurons
19 GSM934893 5hmC NPC 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
20 GSM934894 5hmC neurons 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum 5hmC enriched DNA fraction after pull-down with 5hmC antibodies. DNA was isolated from neurons Input DNA from neurons
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