Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(718)		   SAGE RsaI
(3)		   SAGE Sau3A
(37)		   MPSS
(100)		   GeneChip
(89,973)		   Tiling Array
(2,000)		   cDNA Array
(11,116)		   Oligo Array
(53,181)		   Bead Array
(13,914)		   Protein Array
(0)		   Antibody
(22)		   RT-PCR
(885)		   HT-Seq
(8,762)		   Other
(395)		   All
(181,106)		  
  brain
(27,644)		   blood
(21,024)		   connective
(11,488)		   reproductive
(6,618)		   muscular
(11,970)		   digestive
(4,585)		   liver
(30,267)		   lung
(8,052)		   urinary
(4,873)		   endo/exo-crine
(5,381)		   embryo
(7,581)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(9,138)		   unclassified
(32,485)		   all
(181,106)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM229424 Hamster Brain vs Mouse Brain 20,868 UCLA 2007-09-13 [Oligo Array] Agilent-011978 Mouse Microarray G4121A (Feature Number version) (GPL891) RNA Cricetulus griseus,Mus musculus
Cricetulus griseus,Mus musculus		 cerebrum Total RNA from Chinese hamster whole brain Total RNA from mouse whole brain
2 GSM752153 pup_brain 0 BGI-Shenzhen, Shenzhen 518083, China 2011-06-30 [HT Sequencing] Illumina HiSeq 2000 (Heterocephalus glaber) (GPL13793) SRA Heterocephalus glaber
Heterocephalus glaber		 cerebrum brain in pupil naked mole rat
3 GSM752154 brain4 0 BGI-Shenzhen, Shenzhen 518083, China 2011-06-30 [HT Sequencing] Illumina HiSeq 2000 (Heterocephalus glaber) (GPL13793) SRA Heterocephalus glaber
Heterocephalus glaber		 cerebrum brain in 4-year naked mole rat
4 GSM752155 brain20 0 BGI-Shenzhen, Shenzhen 518083, China 2011-06-30 [HT Sequencing] Illumina HiSeq 2000 (Heterocephalus glaber) (GPL13793) SRA Heterocephalus glaber
Heterocephalus glaber		 cerebrum brain in 20-year naked mole rat
5 GSM752159 low_brain 0 BGI-Shenzhen, Shenzhen 518083, China 2011-06-30 [HT Sequencing] Illumina HiSeq 2000 (Heterocephalus glaber) (GPL13793) SRA Heterocephalus glaber
Heterocephalus glaber		 cerebrum brain in 4 years old hypoxia-exposed naked mole rat
6 GSM934826 5mC NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
7 GSM934827 5mC neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum methylated DNA fraction enriched by MIRA. DNA was isolated from neurons Input DNA from neurons
8 GSM934828 H3K27me3 NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
9 GSM934829 H3K27me3 neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum H3K27me3 ChIp DNA from neurons Input DNA from neurons
10 GSM934830 H3K4me3 NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
11 GSM934831 H3K4me3 neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum H3K4me3 ChIp DNA from neurons Input DNA from neurons
12 GSM934832 H3K36me3 NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
13 GSM934833 H3K36me3 neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum H3K36me3 ChIp DNA from neurons Input DNA from neurons
14 GSM934834 5hmC NPC 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
15 GSM934835 5hmC neurons 1/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4) (GPL15588) genomic Mus musculus
Mus musculus		 cerebrum 5hmC enriched DNA fraction after pull-down with 5hmC antibodies. DNA was isolated from neurons Input DNA from neurons
16 GSM934885 5mC NPC 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
17 GSM934886 5mC neurons 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum methylated DNA fraction enriched by MIRA. DNA was isolated from neurons Input DNA from neurons
18 GSM934887 H3K27me3 NPC 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
19 GSM934888 H3K27me3 neurons 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum H3K27me3 ChIp DNA from neurons Input DNA from neurons
20 GSM934889 H3K4me3 NPC 2/4 2,178,447 City of Hope National Medical Center 2012-05-22 [Tiling Array] NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (2/4) (GPL15589) genomic Mus musculus
Mus musculus		 cerebrum Cells were isolated by FACs sorting from nmouse cortex using GFP/RFP reported system at 15.5E embryonic development. GFP+ (under Nestin promoter), RFP - (Under Dbx promoter)
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