Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,432)
  Primates
(665)
  Rodents
(7,826)
  Mammals
(399)
  Vertebrates
(731)
  Invertebrates
(1,567)
  Plants
(3,435)
  Bacteria
(998)
  Viruses
(14)
  Phages
(0)
  Unclassified
(76)
  All
(33,163)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(2,864)
  Tiling Array
(48)
  cDNA Array
(80)
  Oligo Array
(4,122)
  Bead Array
(598)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(19)
  HT-Seq
(85)
  Other
(9)
  All
(7,826)
 
  brain
(1,154)
  blood
(679)
  connective
(375)
  reproductive
(118)
  muscular
(684)
  digestive
(192)
  liver
(2,935)
  lung
(233)
  urinary
(160)
  endo/exo-crine
(283)
  embryo
(159)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(181)
  unclassified
(673)
  all
(7,826)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM392052 XEN_H3K4me3_2 0 University of Toronto 2009-04-14 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
embryo Extraembryonic endoderm stem cell
2 GSM392051 XEN_H3K4me3_1 0 University of Toronto 2009-04-14 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
embryo Extraembryonic endoderm stem cell
3 GSM392054 XEN_H3K27me3_2 0 University of Toronto 2009-04-14 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
embryo Extraembryonic endoderm stem cell
4 GSM392053 XEN_H3K27me3_1 0 University of Toronto 2009-04-14 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
embryo Extraembryonic endoderm stem cell
5 GSM388881 Xen cells 35,557 University of Toronto 2009-04-02 [GeneChip] [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] (GPL6246) RNA Mus musculus
Mus musculus
embryo extraembryonic endoderm stem cells
6 GSM414901 WT whole embryo 2 381 university of tokyo 2009-06-09 [RT-PCR] Applied_Biosystems_Taqman_miRNA_Expression Assays_A (Mouse) (GPL8527) RNA Mus musculus
Mus musculus
embryo WT whole embryo
7 GSM414898 WT whole embryo 1 381 university of tokyo 2009-06-09 [RT-PCR] Applied_Biosystems_Taqman_miRNA_Expression Assays_A (Mouse) (GPL8527) RNA Mus musculus
Mus musculus
embryo WT whole embryo
8 GSM400308 Wild type CCE ES cells Control rep3r 25,697 National University of Singapore (NUS) 2009-05-06 [Bead Array] Illumina MouseRef-8 v2.0 expression beadchip (GPL6885) RNA Mus musculus
Mus musculus
embryo Wild type CCE ES cells
9 GSM400307 Wild type CCE ES cells Control rep3 25,697 National University of Singapore (NUS) 2009-05-06 [Bead Array] Illumina MouseRef-8 v2.0 expression beadchip (GPL6885) RNA Mus musculus
Mus musculus
embryo Wild type CCE ES cells
10 GSM400306 Wild type CCE ES cells Control rep2 25,697 National University of Singapore (NUS) 2009-05-06 [Bead Array] Illumina MouseRef-8 v2.0 expression beadchip (GPL6885) RNA Mus musculus
Mus musculus
embryo Wild type CCE ES cells
11 GSM400305 Wild type CCE ES cells Control rep1 25,697 National University of Singapore (NUS) 2009-05-06 [Bead Array] Illumina MouseRef-8 v2.0 expression beadchip (GPL6885) RNA Mus musculus
Mus musculus
embryo Wild type CCE ES cells
12 GSM389809 urogenital_sinus_epithelium_rep3 45,101 New York University 2009-04-07 [GeneChip] [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array (GPL1261) RNA Mus musculus
Mus musculus
embryo Urogenital sinus epithelium cells from 16-day-old mice embryos
13 GSM389808 urogenital_sinus_epithelium_rep2 45,101 New York University 2009-04-07 [GeneChip] [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array (GPL1261) RNA Mus musculus
Mus musculus
embryo Urogenital sinus epithelium cells from 16-day-old mice embryos
14 GSM389807 urogenital_sinus_epithelium_rep1 45,101 New York University 2009-04-07 [GeneChip] [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array (GPL1261) RNA Mus musculus
Mus musculus
embryo Urogenital sinus epithelium cells from 16-day-old mice embryos
15 GSM413126 TBP_LF2_undiff 385,467 Radboud University 2009-06-04 [Tiling Array] Radboud University Mus musculus 385K Tiling array [2006-07-17_MM8Tiling_Set38] (GPL8656) genomic Mus musculus
Mus musculus
embryo TBP ChIP DNA from LF2 undifferentiated ES cells Input genomic DNA from LF2 undifferentiated ES cells
16 GSM413127 TBP_LF2_4d-atRA 385,467 Radboud University 2009-06-04 [Tiling Array] Radboud University Mus musculus 385K Tiling array [2006-07-17_MM8Tiling_Set38] (GPL8656) genomic Mus musculus
Mus musculus
embryo TBP ChIP DNA from LF2 4d atRA treated ES cells Input genomic DNA from LF2 4d atRA treated ES cells
17 GSM413128 TBP_LF2_10d-EB 385,467 Radboud University 2009-06-04 [Tiling Array] Radboud University Mus musculus 385K Tiling array [2006-07-17_MM8Tiling_Set38] (GPL8656) genomic Mus musculus
Mus musculus
embryo TBP ChIP DNA from LF2 10d EB ES cells Input genomic DNA from LF2 10d EB ES cells
18 GSM413123 TBP_E14_undiff 385,467 Radboud University 2009-06-04 [Tiling Array] Radboud University Mus musculus 385K Tiling array [2006-07-17_MM8Tiling_Set38] (GPL8656) genomic Mus musculus
Mus musculus
embryo TBP ChIP DNA from E14 undifferentiated ES cells Input genomic DNA from E14 undifferentiated ES cells
19 GSM413124 TBP_E14_4d-atRA 385,467 Radboud University 2009-06-04 [Tiling Array] Radboud University Mus musculus 385K Tiling array [2006-07-17_MM8Tiling_Set38] (GPL8656) genomic Mus musculus
Mus musculus
embryo TBP ChIP DNA from E14 4d atRA treated ES cells Input genomic DNA from E14 4d atRA treated ES cells
20 GSM413125 TBP_E14_10d-EB 385,467 Radboud University 2009-06-04 [Tiling Array] Radboud University Mus musculus 385K Tiling array [2006-07-17_MM8Tiling_Set38] (GPL8656) genomic Mus musculus
Mus musculus
embryo TBP ChIP DNA from E14 10d EB ES cells Input genomic DNA from E14 10d EB ES cells
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