Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(718)
  SAGE RsaI
(3)
  SAGE Sau3A
(37)
  MPSS
(100)
  GeneChip
(108,928)
  Tiling Array
(2,164)
  cDNA Array
(11,311)
  Oligo Array
(60,928)
  Bead Array
(21,037)
  Protein Array
(0)
  Antibody
(28)
  RT-PCR
(1,166)
  HT-Seq
(17,667)
  Other
(968)
  All
(225,055)
 
  brain
(32,747)
  blood
(26,065)
  connective
(14,480)
  reproductive
(8,338)
  muscular
(14,417)
  digestive
(5,405)
  liver
(35,571)
  lung
(10,598)
  urinary
(5,877)
  endo/exo-crine
(7,366)
  embryo
(10,361)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(10,334)
  unclassified
(43,496)
  all
(225,055)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM539870 mouse lung tissue [09-002] 16,786 NIAMS 2010-05-03 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
lung Mouse Lung
2 GSM1003817 UW_DnaseDgf_Lung_adult-8wks 0 ENCODE DCC 2012-09-13 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung Lung
3 GSM1004263 100% Mouse Replicate 1 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
lung mouse normal lung tissue
4 GSM1004264 100% Mouse Replicate 2 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
lung mouse normal lung tissue
5 GSM1004265 100% Mouse Replicate 3 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
lung mouse normal lung tissue
6 GSM1014194 UW_DnaseSeq_Lung_adult-8wks_C57BL/6 0 ENCODE DCC 2012-10-03 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
lung Lung
7 GSM1020645 mouse_a_lung 0 MIT 2012-10-17 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
lung mouse_lung
8 GSM1020653 mouse_b_lung 0 MIT 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung mouse_lung
9 GSM1020662 mouse_c_lung 0 MIT 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung mouse_lung
10 GSM1020671 rat_a_lung 0 MIT 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Rattus norvegicus) (GPL14844) SRA Rattus norvegicus
Rattus norvegicus
lung rat_lung
11 GSM1020680 rat_b_lung 0 MIT 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Rattus norvegicus) (GPL14844) SRA Rattus norvegicus
Rattus norvegicus
lung rat_lung
12 GSM1020689 rat_c_lung 0 MIT 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Rattus norvegicus) (GPL14844) SRA Rattus norvegicus
Rattus norvegicus
lung rat_lung
13 GSM1051158 mouse lung 0 University of California, San Diego 2012-12-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung mouse lung
14 GSM1055270 normal_lung_rep1_total RNA_total RNA 0 Stanford University 2012-12-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung lung - total RNA
15 GSM1055271 normal_lung_rep2_total RNA_total RNA 0 Stanford University 2012-12-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung lung - total RNA
16 GSM1055272 normal_lung_rep3_total RNA_total RNA 0 Stanford University 2012-12-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung lung - total RNA
17 GSM1055273 tumor_rep1_total RNA_total RNA 0 Stanford University 2012-12-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung lung adenocarcinoma - total RNA
18 GSM1055274 tumor_rep2_total RNA_total RNA 0 Stanford University 2012-12-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung lung adenocarcinoma - total RNA
19 GSM1055275 tumor_rep3_total RNA_total RNA 0 Stanford University 2012-12-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
lung lung adenocarcinoma - total RNA
20 GSM1055276 normal_lung_rep1_small RNA_small RNA 0 Stanford University 2012-12-19 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
lung lung - small RNA
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