Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(718)
  SAGE RsaI
(3)
  SAGE Sau3A
(37)
  MPSS
(100)
  GeneChip
(108,928)
  Tiling Array
(2,164)
  cDNA Array
(11,311)
  Oligo Array
(60,928)
  Bead Array
(21,037)
  Protein Array
(0)
  Antibody
(28)
  RT-PCR
(1,166)
  HT-Seq
(17,667)
  Other
(968)
  All
(225,055)
 
  brain
(32,747)
  blood
(26,065)
  connective
(14,480)
  reproductive
(8,338)
  muscular
(14,417)
  digestive
(5,405)
  liver
(35,571)
  lung
(10,598)
  urinary
(5,877)
  endo/exo-crine
(7,366)
  embryo
(10,361)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(10,334)
  unclassified
(43,496)
  all
(225,055)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM400413 skeletal muscle 18 1,201,338 Genomics Institute of the Novartis Research Foundation 2009-05-06 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus
muscle skeletal_muscle
2 GSM400422 heart 27 1,201,338 Genomics Institute of the Novartis Research Foundation 2009-05-06 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus
heart heart
3 GSM400423 heart 28 1,201,338 Genomics Institute of the Novartis Research Foundation 2009-05-06 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus
heart heart
4 GSM505608 Six1_ChIP-on-Chip_Myoblast_Rep1 (Agilent 022328) 974,016 Ottawa Institute of Systems Biology 2010-02-02 [Oligo Array] Agilent-022328 Six_ChIP_01_of_03_v2 (GPL9975) genomic Mus musculus
Mus musculus
muscle C2C12, Myoblast, IP, Replicate1 C2C12, Myoblast, Input, Replicate1
5 GSM505609 Six1_ChIP-on-Chip_Myoblast_Rep2 (Agilent 022328) 974,016 Ottawa Institute of Systems Biology 2010-02-02 [Oligo Array] Agilent-022328 Six_ChIP_01_of_03_v2 (GPL9975) genomic Mus musculus
Mus musculus
muscle C2C12, Myoblast, IP, Replicate2 C2C12, Myoblast, Input, Replicate2
6 GSM505610 Six1_ChIP-on-Chip_Myoblast_Rep3 (Agilent 022328) 974,016 Ottawa Institute of Systems Biology 2010-02-02 [Oligo Array] Agilent-022328 Six_ChIP_01_of_03_v2 (GPL9975) genomic Mus musculus
Mus musculus
muscle C2C12, Myoblast, IP, Replicate3 C2C12, Myoblast, Input, Replicate3
7 GSM505697 Six1_ChIP-on-Chip_Myoblast_Rep1 (Agilent 022329) 974,016 Ottawa Institute of Systems Biology 2010-02-02 [Oligo Array] Agilent-022329 Six_ChIP_02_of_03_v2 022328 (GPL9976) genomic Mus musculus
Mus musculus
muscle C2C12, Myoblast, IP, Replicate1 C2C12, Myoblast, Input, Replicate1
8 GSM505698 Six1_ChIP-on-Chip_Myoblast_Rep2 (Agilent 022329) 974,016 Ottawa Institute of Systems Biology 2010-02-02 [Oligo Array] Agilent-022329 Six_ChIP_02_of_03_v2 022328 (GPL9976) genomic Mus musculus
Mus musculus
muscle C2C12, Myoblast, IP, Replicate2 C2C12, Myoblast, Input, Replicate2
9 GSM505699 Six1_ChIP-on-Chip_Myoblast_Rep3 (Agilent 022329) 974,016 Ottawa Institute of Systems Biology 2010-02-02 [Oligo Array] Agilent-022329 Six_ChIP_02_of_03_v2 022328 (GPL9976) genomic Mus musculus
Mus musculus
muscle C2C12, Myoblast, IP, Replicate3 C2C12, Myoblast, Input, Replicate3
10 GSM506212 Six1_ChIP-on-Chip_Myoblast_Rep1 (Agilent 022332) 973,883 Ottawa Institute of Systems Biology 2010-02-03 [Oligo Array] Agilent-022332 Six_ChIP_03_of_03_v2 022330 (GPL9977) genomic Mus musculus
Mus musculus
muscle C2C12, Myoblast, IP, Replicate1 C2C12, Myoblast, Input, Replicate1
11 GSM506213 Six1_ChIP-on-Chip_Myoblast_Rep2 (Agilent 022332) 973,883 Ottawa Institute of Systems Biology 2010-02-03 [Oligo Array] Agilent-022332 Six_ChIP_03_of_03_v2 022330 (GPL9977) genomic Mus musculus
Mus musculus
muscle C2C12, Myoblast, IP, Replicate2 C2C12, Myoblast, Input, Replicate2
12 GSM506214 Six1_ChIP-on-Chip_Myoblast_Rep3 (Agilent 022332) 973,883 Ottawa Institute of Systems Biology 2010-02-03 [Oligo Array] Agilent-022332 Six_ChIP_03_of_03_v2 022330 (GPL9977) genomic Mus musculus
Mus musculus
muscle C2C12, Myoblast, IP, Replicate3 C2C12, Myoblast, Input, Replicate3
13 GSM1053670 C2C12_G0_H3 871,162 Centre for Cellular and Molecular Biology 2012-12-14 [Oligo Array] Genotypic Technology Private Limited designed Custom Mus musculus 1 million ChIP-on-chip Array (AMADID-024567) (GPL16014) genomic Mus musculus
Mus musculus
muscle C2C12 myoblasts were grown in suspension culture for 48h and harvested for chromatin preparation
14 GSM1053671 C2C12_G0_H3K27me3 871,162 Centre for Cellular and Molecular Biology 2012-12-14 [Oligo Array] Genotypic Technology Private Limited designed Custom Mus musculus 1 million ChIP-on-chip Array (AMADID-024567) (GPL16014) genomic Mus musculus
Mus musculus
muscle C2C12 myoblasts were grown in suspension culture for 48h and harvested for chromatin preparation
15 GSM1053672 C2C12_G0_H3K4me3 871,162 Centre for Cellular and Molecular Biology 2012-12-14 [Oligo Array] Genotypic Technology Private Limited designed Custom Mus musculus 1 million ChIP-on-chip Array (AMADID-024567) (GPL16014) genomic Mus musculus
Mus musculus
muscle C2C12 myoblasts were grown in suspension culture for 48h and harvested for chromatin preparation
16 GSM1195525 Heart, MRL/MpJ mouse, males 5 wks 713,168 Gdansk University of Technology 2013-07-25 [Oligo Array] NimbleGen mouse DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Arrays (GPL15761) genomic Mus musculus
Mus musculus
heart Heart, MRL/MpJ mouse, males 5 wks
17 GSM1195528 Heart, C57BL/6J mouse, males 5 wks 713,168 Gdansk University of Technology 2013-07-25 [Oligo Array] NimbleGen mouse DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Arrays (GPL15761) genomic Mus musculus
Mus musculus
heart Heart, C57BL/6J mouse, males 5 wks
18 GSM1005602 PTB rep1 527,499 UCSC 2012-09-18 [GeneChip] [mjay] Custom Affymetrix Mouse Exon Junction Array (GPL13185) RNA Mus musculus
Mus musculus
muscle C2C12 myoblasts
19 GSM1005603 PTB rep2 527,499 UCSC 2012-09-18 [GeneChip] [mjay] Custom Affymetrix Mouse Exon Junction Array (GPL13185) RNA Mus musculus
Mus musculus
muscle C2C12 myoblasts
20 GSM1005604 PTB rep3 527,499 UCSC 2012-09-18 [GeneChip] [mjay] Custom Affymetrix Mouse Exon Junction Array (GPL13185) RNA Mus musculus
Mus musculus
muscle C2C12 myoblasts
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