Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(718)
  SAGE RsaI
(3)
  SAGE Sau3A
(37)
  MPSS
(100)
  GeneChip
(108,928)
  Tiling Array
(2,164)
  cDNA Array
(11,311)
  Oligo Array
(60,928)
  Bead Array
(21,037)
  Protein Array
(0)
  Antibody
(28)
  RT-PCR
(1,166)
  HT-Seq
(17,667)
  Other
(968)
  All
(225,055)
 
  brain
(32,747)
  blood
(26,065)
  connective
(14,480)
  reproductive
(8,338)
  muscular
(14,417)
  digestive
(5,405)
  liver
(35,571)
  lung
(10,598)
  urinary
(5,877)
  endo/exo-crine
(7,366)
  embryo
(10,361)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(10,334)
  unclassified
(43,496)
  all
(225,055)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1000067 LICR_ChipSeq_Testis_H3K36me3_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
testis Testis
2 GSM1000078 LICR_ChipSeq_Testis_H3K4me1_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
testis Testis
3 GSM1000079 LICR_ChipSeq_Testis_H3K4me3_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
testis Testis
4 GSM1000081 LICR_ChipSeq_Testis_H3K27ac_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
testis Testis
5 GSM1000132 LICR_ChipSeq_Placenta_H3K4me3_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
placenta Placenta
6 GSM1000133 LICR_ChipSeq_Placenta_H3K4me1_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
placenta Placenta
7 GSM1000134 LICR_ChipSeq_Placenta_H3K27ac_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
placenta Placenta
8 GSM1000145 LICR_ChipSeq_Testis_H3K27me3_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
testis Testis
9 GSM1000203 LICR_ChipSeq_Testis_Input_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
testis Testis
10 GSM1000207 LICR_ChipSeq_Placenta_Input_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
placenta Placenta
11 GSM1000565 CSHL_RnaSeq_Placenta_adult-8wks 0 ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus
placenta Placenta
12 GSM1019068 5fC enriched DNA from Tdg fl/fl mouse ES cells, replicate 1 0 Emory University 2012-10-12 [HT Sequencing] Illumina HiScanSQ (Mus musculus) (GPL16173) SRA Mus musculus
Mus musculus
placenta 5fC enriched DNA from Tdg fl/fl mouse ES cells, replicate 1
13 GSM1019069 5fC enriched DNA from Tdg fl/fl mouse ES cells, replicate 2 0 Emory University 2012-10-12 [HT Sequencing] Illumina HiScanSQ (Mus musculus) (GPL16173) SRA Mus musculus
Mus musculus
placenta 5fC enriched DNA from Tdg fl/fl mouse ES cells, replicate 2
14 GSM1019070 5hmC enriched DNA from Tdg fl/fl mouse ES cells, replicate 1 0 Emory University 2012-10-12 [HT Sequencing] Illumina HiScanSQ (Mus musculus) (GPL16173) SRA Mus musculus
Mus musculus
placenta 5hmC enriched DNA from Tdg fl/fl mouse ES cells, replicate 1
15 GSM1019071 5hmC enriched DNA from Tdg fl/fl mouse ES cells, replicate 2 0 Emory University 2012-10-12 [HT Sequencing] Illumina HiScanSQ (Mus musculus) (GPL16173) SRA Mus musculus
Mus musculus
placenta 5hmC enriched DNA from Tdg fl/fl mouse ES cells, replicate 2
16 GSM1019072 p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate a 0 Emory University 2012-10-12 [HT Sequencing] Illumina HiScanSQ (Mus musculus) (GPL16173) SRA Mus musculus
Mus musculus
placenta p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate a
17 GSM1019073 p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate b 0 Emory University 2012-10-12 [HT Sequencing] Illumina HiScanSQ (Mus musculus) (GPL16173) SRA Mus musculus
Mus musculus
placenta p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate b
18 GSM1019074 p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate c 0 Emory University 2012-10-12 [HT Sequencing] Illumina HiScanSQ (Mus musculus) (GPL16173) SRA Mus musculus
Mus musculus
placenta p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate c
19 GSM1019075 Non-enriched input genomic DNA from Tdg fl/fl mouse ES cells 0 Emory University 2012-10-12 [HT Sequencing] Illumina HiScanSQ (Mus musculus) (GPL16173) SRA Mus musculus
Mus musculus
placenta Non-enriched input genomic DNA from Tdg fl/fl mouse ES cells
20 GSM1019084 Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells a 0 Emory University 2012-10-12 [HT Sequencing] Illumina HiScanSQ (Mus musculus) (GPL16173) SRA Mus musculus
Mus musculus
placenta Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells a
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