Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(718)
  SAGE RsaI
(3)
  SAGE Sau3A
(37)
  MPSS
(100)
  GeneChip
(108,928)
  Tiling Array
(2,164)
  cDNA Array
(11,311)
  Oligo Array
(60,928)
  Bead Array
(21,037)
  Protein Array
(0)
  Antibody
(28)
  RT-PCR
(1,166)
  HT-Seq
(17,667)
  Other
(968)
  All
(225,055)
 
  brain
(32,747)
  blood
(26,065)
  connective
(14,480)
  reproductive
(8,338)
  muscular
(14,417)
  digestive
(5,405)
  liver
(35,571)
  lung
(10,598)
  urinary
(5,877)
  endo/exo-crine
(7,366)
  embryo
(10,361)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(10,334)
  unclassified
(43,496)
  all
(225,055)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM822765 Global 5' RACE +/- [MR97] 17,578,027 EMBL Grenoble Outstation 2011-10-26 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
unclassified source_name:Global 5' RACE +/- title:Global 5' RACE +/- [MR97] description:Adult Global 5'-RACE read_length: 105
2 GSM822766 Global 5' RACE -/ADH [MR99] 17,578,027 EMBL Grenoble Outstation 2011-10-26 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
unclassified source_name:Global 5' RACE -/ADH title:Global 5' RACE -/ADH [MR99] description:Adult Global 5'-RACE read_length: 105
3 GSM466729 Mili IP_Tdrd9+/- replicate2 2,545,853 EMBL Grenoble Outstation 2009-10-30 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
unclassified source_name:Mili IP_Tdrd9+/- title:Mili IP_Tdrd9+/- replicate2 description:library source: Protein-associated small RNAs library selection: Immunoprecipitation and gel elution of ~28-30 nt RNAs by radioactive spike labelling
4 GSM466728 Mili IP_Tdrd9+/- replicate1 2,448,249 EMBL Grenoble Outstation 2009-10-30 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
unclassified source_name:Mili IP_Tdrd9+/- title:Mili IP_Tdrd9+/- replicate1 description:library source: Protein-associated small RNAs library selection: Immunoprecipitation and gel elution of ~28-30 nt RNAs by radioactive spike labelling
5 GSM689055 5pmut_rep1 1,976,070 Seoul National University 2011-03-11 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
unclassified source_name:Dicer-null mES rescued with 5' pocket mutant Dicer title:5pmut_rep1
6 GSM689056 5pmut_rep2 1,965,164 Seoul National University 2011-03-11 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
unclassified source_name:Dicer-null mES rescued with 5' pocket mutant Dicer title:5pmut_rep2
7 GSM689054 wt_rep2 1,468,070 Seoul National University 2011-03-11 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
unclassified source_name:Dicer-null mES rescued with wild-type Dicer title:wt_rep2
8 GSM689053 wt_rep1 1,379,794 Seoul National University 2011-03-11 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
unclassified source_name:Dicer-null mES rescued with wild-type Dicer title:wt_rep1
9 GSM466730 Mili IP_Tdrd9-/- replicate1 1,040,494 EMBL Grenoble Outstation 2009-10-30 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
unclassified source_name:Mili IP_Tdrd9-/- title:Mili IP_Tdrd9-/- replicate1 description:library source: Protein-associated small RNAs library selection: Immunoprecipitation and gel elution of ~28-30 nt RNAs by radioactive spike labelling
10 GSM466731 Mili IP_Tdrd9-/- replicate2 1,032,753 EMBL Grenoble Outstation 2009-10-30 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
unclassified source_name:Mili IP_Tdrd9-/- title:Mili IP_Tdrd9-/- replicate2 description:library source: Protein-associated small RNAs library selection: Immunoprecipitation and gel elution of ~28-30 nt RNAs by radioactive spike labelling
11 GSM855970 Dicer_Null 832,204 MIT 2012-01-03 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
unclassified source_name:Dicer -/- murine sarcoma cell line (KRasG12D,p53 -/-) derived from Dicer f/- parental line title:Dicer_Null
12 GSM307157 mEFsmallrna_rep1 815,537 Whitehead Institute 2008-07-23 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
unclassified source_name:MEF title:mEFsmallrna_rep1 description:MEFs were prepared as described in Tucker et al., Nucleic Acids Res 1997.
13 GSM416611 NIH3T3 759,837 Whitehead Institute 2009-06-11 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
unclassified source_name:cell line title:NIH3T3 description:none
14 GSM416732 MEF 549,185 Whitehead Institute 2009-06-12 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
unclassified source_name:cell line title:MEF description:none
15 GSM510456 newborn_rep12 489,752 MIT/Whitehad Institute 2010-02-17 [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) SRA Mus musculus
Mus musculus
unclassified source_name:newborn title:newborn_rep12 description:sample name: solexa_HCT179
16 GSM906325 IP Ago1 360,926 Ludwig-Maximilians University 2012-03-29 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
unclassified source_name:NIH3T3_MCMV_Ago1_IP title:IP Ago1 description:total RNA after IP, size-selected (17-30 nt)
17 GSM485236 mRNA_delayed_digital_gene_expression 356,981 Shantou University 2009-12-15 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
unclassified source_name:delayed_implantation title:mRNA_delayed_digital_gene_expression description:mRNA tag profiling (digital gene expression) analysis of delayed implantation
18 GSM485237 mRNA_activation_digital_gene_expression 348,124 Shantou University 2009-12-15 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
unclassified source_name:activation title:mRNA_activation_digital_gene_expression description:mRNA tag profiling (digital gene expression) analysis of activation
19 GSM849855 Total RNA extracted from mock infected NIH-3T3 cells 314,477 CNRS - Institut de Biologie Moléculaire et Cellulaire (IBMC) 2011-12-15 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
unclassified source_name:NIH-3T3_mock title:Total RNA extracted from mock infected NIH-3T3 cells
20 GSM906326 IP Ago2 288,844 Ludwig-Maximilians University 2012-03-29 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
unclassified source_name:NIH3T3_MCMV_Ago2_IP title:IP Ago2 description:total RNA after IP, size-selected (17-30 nt)
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