Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(928)

Primates
(0)

Rodents
(456)

Invertebrates
(0)

Viruses
(0)

Phages
(0)

Unclassified
(24)

All
(2,512)

SAGE NlaIII
(1)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(441)

Tiling Array
(0)

cDNA Array
(4)

Oligo Array
(8)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(2)

Other
(0)

All
(456)

digestive
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(14)

embryo
(2)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(1)

unclassified
(32)

all
(456)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM77384	M cell, purified UEA+ve FAE epithelia	532	UCC	2005-10-11	[cDNA Array] Sigma Genosys Panorama Mouse Cytokine Gene Array (GPL195)	RNA	Mus musculus	unclassified	source_name:purified M cells from FAE isolated above murine Peyer's patches title:M cell, purified UEA+ve FAE epithelia description:PhoretixÃ¯Æ’â€ Array2 Software (Nonlinear Dynamics, Newcastle-upon-Tyne, UK) was used to analyze the array images. The images were background subtracted and the intensity normalized to negative controls and to the selected housekeeping gene, beta-actin. The normalized data was then imported to Microsoft Excel (Microsoft, Ireland), where the ratios of differences between the samples of interest were calculated. The normalized data was also analyzed using Cluster and TreeView (Michael Eisen, Stanford University, USA). Using Cluster, the array data was filtered; log transformed, median centered and hierarchically clustered and visualized using TreeView. The Cluster transformed data was also analyzed using J-Express software (MolMine AS, Bergen, Norway) to evaluate common gene expression trends. Gene lists were complied and the function of the genes of interest were determined using Genecards (http://bioinformatics.weizmann.ac.il/cards-bin/carddisp?[gene) and the PubMed database (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed).
2	GSM77385	UEA-ve FAE	532	UCC	2005-10-11	[cDNA Array] Sigma Genosys Panorama Mouse Cytokine Gene Array (GPL195)	RNA	Mus musculus	unclassified	source_name:UEA-ve FAE isolated form Peyer's patches title:UEA-ve FAE description:PhoretixÃ¯Æ’â€ Array2 Software (Nonlinear Dynamics, Newcastle-upon-Tyne, UK) was used to analyze the array images. The images were background subtracted and the intensity normalized to negative controls and to the selected housekeeping gene, beta-actin. The normalized data was then imported to Microsoft Excel (Microsoft, Ireland), where the ratios of differences between the samples of interest were calculated. The normalized data was also analyzed using Cluster and TreeView (Michael Eisen, Stanford University, USA). Using Cluster, the array data was filtered; log transformed, median centered and hierarchically clustered and visualized using TreeView. The Cluster transformed data was also analyzed using J-Express software (MolMine AS, Bergen, Norway) to evaluate common gene expression trends. Gene lists were complied and the function of the genes of interest were determined using Genecards (http://bioinformatics.weizmann.ac.il/cards-bin/carddisp?[gene) and the PubMed database (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed).
3	GSM914890	SLOW-5.1-REP1	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-5.1-REP1 description:CHO gene expression data
4	GSM914891	SLOW-5.11-REP1	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-5.11-REP1 description:CHO gene expression data
5	GSM914892	SLOW-7.7-REP1	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-7.7-REP1 description:CHO gene expression data
6	GSM914893	SLOW-10.2-REP1	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-10.2-REP1 description:CHO gene expression data
7	GSM914894	SLOW-11.1-REP1	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-11.1-REP1 description:CHO gene expression data
8	GSM914895	SLOW-5.1-REP2	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-5.1-REP2 description:CHO gene expression data
9	GSM914896	SLOW-5.11-REP2	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-5.11-REP2 description:CHO gene expression data
10	GSM914897	SLOW-7.7-REP2	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-7.7-REP2 description:CHO gene expression data
11	GSM914898	SLOW-10.2-REP2	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-10.2-REP2 description:CHO gene expression data
12	GSM914899	SLOW-11.1-REP2	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-11.1-REP2 description:CHO gene expression data
13	GSM914900	SLOW-5.1-REP3	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-5.1-REP3 description:CHO gene expression data
14	GSM914901	SLOW-5.11-REP3	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-5.11-REP3 description:CHO gene expression data
15	GSM914902	SLOW-7.7-REP3	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-7.7-REP3 description:CHO gene expression data
16	GSM914903	SLOW-10.2-REP3	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-10.2-REP3 description:CHO gene expression data
17	GSM914904	SLOW-11.1-REP3	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:SLOW-11.1-REP3 description:CHO gene expression data
18	GSM914905	FAST-5.13-REP1	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:FAST-5.13-REP1 description:CHO gene expression data
19	GSM914906	FAST-5.16-REP1	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:FAST-5.16-REP1 description:CHO gene expression data
20	GSM914907	FAST-5.18-REP1	19,809	Dublin City University	2012-04-13	[GeneChip] Affymetrix Wye3aHamster array (GPL15441)	RNA	Cricetulus griseus	unclassified	source_name:Suspension Cell Culture title:FAST-5.18-REP1 description:CHO gene expression data

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