Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(27,231)

Rodents
(7,993)

Phages
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(4,241)

Tiling Array
(0)

cDNA Array
(1,168)

Oligo Array
(1,342)

Bead Array
(991)

Protein Array
(0)

Antibody
(0)

Other
(0)

digestive
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(11)

unclassified
(209)

all
(1,168)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM45178	ALS: SOD1 mouse model, hybridisation 1	20,636	University of Goettingen	2005-03-11	[cDNA Array] University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003 (GPL1800)	RNA	Mus musculus	spine	hSOD1(G93A) transgenic mice: transgenic mice expressing the human SOD1 gene with a G93A mutation (Gurney et al., 1994 [PMID: 8209258]), purchased from The Jackson Laboratory (B6SJL-Tg(SOD1-G93A)1Gur/J, stock no. 002726 [http://www.jax.org/]); fALS (familial amyotrophic lateral sclerosis) mouse model. Control mice: non-transgenic littermates. Timepoint: 17 week-old mice; transgenic mice showed severe signs of paralysis. RNA preparation: isolation of total RNA from spinal cords using RNeasy Maxi Kit (Qiagen) followed by DNase I digestion. RNA processing: RNA amplification (BD Atlas SMART Fluorescent Probe Amplification Kit, starting material: 1000 ng of total RNA, optimised amplification for each sample, stopped at PCR-cycle 18, 19 or 20 within the exponential amplification phase), labeling of amplified cDNA with cy3-/cy5-dCTP (Qiagen LabelStar Array Kit, per array and dye, 1000 ng of amplified cDNA were labeled using two labeling-reactions from the kit). Microarray hybridisation and washing: according to the slide manufacturerÃ‚Â´s recommendations (cf. GLP1800); microarray scanning: GMS 428 Microarray Scanner (AffyMetrix). Microarray raw data: software package AIM (Katzer et al., 2003 [PMID: 15376910]). Signals with low quality were excluded from data analysis. Normalisation: pin-wise lowess-regression based normalisation (Yang et al., 2002 [PMID: 11842121]). Keywords = amyotrophic lateral sclerosis, ALS, SOD1 mouse model
2	GSM45179	ALS: SOD1 mouse model, hybridisation 2	20,636	University of Goettingen	2005-03-11	[cDNA Array] University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003 (GPL1800)	RNA	Mus musculus	spine	hSOD1(G93A) transgenic mice: transgenic mice expressing the human SOD1 gene with a G93A mutation (Gurney et al., 1994 [PMID: 8209258]), purchased from The Jackson Laboratory (B6SJL-Tg(SOD1-G93A)1Gur/J, stock no. 002726 [http://www.jax.org/]); fALS (familial amyotrophic lateral sclerosis) mouse model. Control mice: non-transgenic littermates. Timepoint: 17 week-old mice; transgenic mice showed severe signs of paralysis. RNA preparation: isolation of total RNA from spinal cords using RNeasy Maxi Kit (Qiagen) followed by DNase I digestion. RNA processing: RNA amplification (BD Atlas SMART Fluorescent Probe Amplification Kit, starting material: 1000 ng of total RNA, optimised amplification for each sample, stopped at PCR-cycle 18, 19 or 20 within the exponential amplification phase), labeling of amplified cDNA with cy3-/cy5-dCTP (Qiagen LabelStar Array Kit, per array and dye, 1000 ng of amplified cDNA were labeled using two labeling-reactions from the kit). Microarray hybridisation and washing: according to the slide manufacturerÃ‚Â´s recommendations (cf. GLP1800); microarray scanning: GMS 428 Microarray Scanner (AffyMetrix). Microarray raw data: software package AIM (Katzer et al., 2003 [PMID: 15376910]). Signals with low quality were excluded from data analysis. Normalisation: pin-wise lowess-regression based normalisation (Yang et al., 2002 [PMID: 11842121]). Keywords = amyotrophic lateral sclerosis, ALS, SOD1 mouse model
3	GSM45180	ALS: SOD1 mouse model, hybridisation 3	20,636	University of Goettingen	2005-03-11	[cDNA Array] University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003 (GPL1800)	RNA	Mus musculus	spine	hSOD1(G93A) transgenic mice: transgenic mice expressing the human SOD1 gene with a G93A mutation (Gurney et al., 1994 [PMID: 8209258]), purchased from The Jackson Laboratory (B6SJL-Tg(SOD1-G93A)1Gur/J, stock no. 002726 [http://www.jax.org/]); fALS (familial amyotrophic lateral sclerosis) mouse model. Control mice: non-transgenic littermates. Timepoint: 17 week-old mice; transgenic mice showed severe signs of paralysis. RNA preparation: isolation of total RNA from spinal cords using RNeasy Maxi Kit (Qiagen) followed by DNase I digestion. RNA processing: RNA amplification (BD Atlas SMART Fluorescent Probe Amplification Kit, starting material: 1000 ng of total RNA, optimised amplification for each sample, stopped at PCR-cycle 18, 19 or 20 within the exponential amplification phase), labeling of amplified cDNA with cy3-/cy5-dCTP (Qiagen LabelStar Array Kit, per array and dye, 1000 ng of amplified cDNA were labeled using two labeling-reactions from the kit). Microarray hybridisation and washing: according to the slide manufacturerÃ‚Â´s recommendations (cf. GLP1800); microarray scanning: GMS 428 Microarray Scanner (AffyMetrix). Microarray raw data: software package AIM (Katzer et al., 2003 [PMID: 15376910]). Signals with low quality were excluded from data analysis. Normalisation: pin-wise lowess-regression based normalisation (Yang et al., 2002 [PMID: 11842121]). Keywords = amyotrophic lateral sclerosis, ALS, SOD1 mouse model
4	GSM45181	ALS: SOD1 mouse model, hybridisation 4	20,636	University of Goettingen	2005-03-11	[cDNA Array] University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003 (GPL1800)	RNA	Mus musculus	spine	hSOD1(G93A) transgenic mice: transgenic mice expressing the human SOD1 gene with a G93A mutation (Gurney et al., 1994 [PMID: 8209258]), purchased from The Jackson Laboratory (B6SJL-Tg(SOD1-G93A)1Gur/J, stock no. 002726 [http://www.jax.org/]); fALS (familial amyotrophic lateral sclerosis) mouse model. Control mice: non-transgenic littermates. Timepoint: 17 week-old mice; transgenic mice showed severe signs of paralysis. RNA preparation: isolation of total RNA from spinal cords using RNeasy Maxi Kit (Qiagen) followed by DNase I digestion. RNA processing: RNA amplification (BD Atlas SMART Fluorescent Probe Amplification Kit, starting material: 1000 ng of total RNA, optimised amplification for each sample, stopped at PCR-cycle 18, 19 or 20 within the exponential amplification phase), labeling of amplified cDNA with cy3-/cy5-dCTP (Qiagen LabelStar Array Kit, per array and dye, 1000 ng of amplified cDNA were labeled using two labeling-reactions from the kit). Microarray hybridisation and washing: according to the slide manufacturerÃ‚Â´s recommendations (cf. GLP1800); microarray scanning: GMS 428 Microarray Scanner (AffyMetrix). Microarray raw data: software package AIM (Katzer et al., 2003 [PMID: 15376910]). Signals with low quality were excluded from data analysis. Normalisation: pin-wise lowess-regression based normalisation (Yang et al., 2002 [PMID: 11842121]). Keywords = amyotrophic lateral sclerosis, ALS, SOD1 mouse model
5	GSM45182	ALS: SOD1 mouse model, hybridisation 5	20,636	University of Goettingen	2005-03-11	[cDNA Array] University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003 (GPL1800)	RNA	Mus musculus	spine	hSOD1(G93A) transgenic mice: transgenic mice expressing the human SOD1 gene with a G93A mutation (Gurney et al., 1994 [PMID: 8209258]), purchased from The Jackson Laboratory (B6SJL-Tg(SOD1-G93A)1Gur/J, stock no. 002726 [http://www.jax.org/]); fALS (familial amyotrophic lateral sclerosis) mouse model. Control mice: non-transgenic littermates. Timepoint: 17 week-old mice; transgenic mice showed severe signs of paralysis. RNA preparation: isolation of total RNA from spinal cords using RNeasy Maxi Kit (Qiagen) followed by DNase I digestion. RNA processing: RNA amplification (BD Atlas SMART Fluorescent Probe Amplification Kit, starting material: 1000 ng of total RNA, optimised amplification for each sample, stopped at PCR-cycle 18, 19 or 20 within the exponential amplification phase), labeling of amplified cDNA with cy3-/cy5-dCTP (Qiagen LabelStar Array Kit, per array and dye, 1000 ng of amplified cDNA were labeled using two labeling-reactions from the kit). Microarray hybridisation and washing: according to the slide manufacturerÃ‚Â´s recommendations (cf. GLP1800); microarray scanning: GMS 428 Microarray Scanner (AffyMetrix). Microarray raw data: software package AIM (Katzer et al., 2003 [PMID: 15376910]). Signals with low quality were excluded from data analysis. Normalisation: pin-wise lowess-regression based normalisation (Yang et al., 2002 [PMID: 11842121]). Keywords = amyotrophic lateral sclerosis, ALS, SOD1 mouse model
6	GSM45183	ALS: SOD1 mouse model, hybridisation 6	20,636	University of Goettingen	2005-03-11	[cDNA Array] University of Goettingen TAL UniGene_Set_RZPD2_mm2 pattern 06102003 (GPL1800)	RNA	Mus musculus	spine	hSOD1(G93A) transgenic mice: transgenic mice expressing the human SOD1 gene with a G93A mutation (Gurney et al., 1994 [PMID: 8209258]), purchased from The Jackson Laboratory (B6SJL-Tg(SOD1-G93A)1Gur/J, stock no. 002726 [http://www.jax.org/]); fALS (familial amyotrophic lateral sclerosis) mouse model. Control mice: non-transgenic littermates. Timepoint: 17 week-old mice; transgenic mice showed severe signs of paralysis. RNA preparation: isolation of total RNA from spinal cords using RNeasy Maxi Kit (Qiagen) followed by DNase I digestion. RNA processing: RNA amplification (BD Atlas SMART Fluorescent Probe Amplification Kit, starting material: 1000 ng of total RNA, optimised amplification for each sample, stopped at PCR-cycle 18, 19 or 20 within the exponential amplification phase), labeling of amplified cDNA with cy3-/cy5-dCTP (Qiagen LabelStar Array Kit, per array and dye, 1000 ng of amplified cDNA were labeled using two labeling-reactions from the kit). Microarray hybridisation and washing: according to the slide manufacturerÃ‚Â´s recommendations (cf. GLP1800); microarray scanning: GMS 428 Microarray Scanner (AffyMetrix). Microarray raw data: software package AIM (Katzer et al., 2003 [PMID: 15376910]). Signals with low quality were excluded from data analysis. Normalisation: pin-wise lowess-regression based normalisation (Yang et al., 2002 [PMID: 11842121]). Keywords = amyotrophic lateral sclerosis, ALS, SOD1 mouse model
7	GSM437402	Group 1 P01	223	University Medical Center Hamburg-Eppendorf	2009-08-06	[cDNA Array] Eppendorf DualChip Mouse inflammation (GPL8961)	RNA	Mus musculus	spleen	C57Bl/6 mouse PLECs C57Bl/6 mouse spleen
8	GSM437403	Group 1 P02	223	University Medical Center Hamburg-Eppendorf	2009-08-06	[cDNA Array] Eppendorf DualChip Mouse inflammation (GPL8961)	RNA	Mus musculus	spleen	C57Bl/6 mouse PLECs C57Bl/6 mouse spleen
9	GSM437404	Group 1 P03	223	University Medical Center Hamburg-Eppendorf	2009-08-06	[cDNA Array] Eppendorf DualChip Mouse inflammation (GPL8961)	RNA	Mus musculus	spleen	C57Bl/6 mouse PLECs C57Bl/6 mouse spleen
10	GSM437405	Group 2 P04	223	University Medical Center Hamburg-Eppendorf	2009-08-06	[cDNA Array] Eppendorf DualChip Mouse inflammation (GPL8961)	RNA	Mus musculus	spleen	C57Bl/6 mouse PLECs C57Bl/6 mouse spleen
11	GSM437406	Group 2 P05	223	University Medical Center Hamburg-Eppendorf	2009-08-06	[cDNA Array] Eppendorf DualChip Mouse inflammation (GPL8961)	RNA	Mus musculus	spleen	C57Bl/6 mouse PLECs C57Bl/6 mouse spleen
12	GSM437407	Group 2 P06	223	University Medical Center Hamburg-Eppendorf	2009-08-06	[cDNA Array] Eppendorf DualChip Mouse inflammation (GPL8961)	RNA	Mus musculus	spleen	C57Bl/6 mouse PLECs C57Bl/6 mouse spleen
13	GSM437408	Group 3 P07	223	University Medical Center Hamburg-Eppendorf	2009-08-06	[cDNA Array] Eppendorf DualChip Mouse inflammation (GPL8961)	RNA	Mus musculus	spleen	C57Bl/6 mouse PLECs C57Bl/6 mouse spleen
14	GSM437409	Group 3 P08	223	University Medical Center Hamburg-Eppendorf	2009-08-06	[cDNA Array] Eppendorf DualChip Mouse inflammation (GPL8961)	RNA	Mus musculus	spleen	C57Bl/6 mouse PLECs C57Bl/6 mouse spleen
15	GSM437410	Group 3 P09	223	University Medical Center Hamburg-Eppendorf	2009-08-06	[cDNA Array] Eppendorf DualChip Mouse inflammation (GPL8961)	RNA	Mus musculus	spleen	C57Bl/6 mouse PLECs C57Bl/6 mouse spleen
16	GSM171109	N2a_22L vers Mock_rep1	20,355	TU MÃƒÂ¼nchen	2007-02-23	[cDNA Array] GSF/IEG mouse array (GPL3697)	RNA	Mus musculus	unclassified	source_name:N2a_22L N2a_Mock title:N2a_22L vers Mock_rep1 description:RNA isolation, Labelling, Hybridisation and Scanning procedure are described in the fields above
17	GSM171110	N2a_22L vers Mock_rep2	20,355	TU MÃƒÂ¼nchen	2007-02-23	[cDNA Array] GSF/IEG mouse array (GPL3697)	RNA	Mus musculus	unclassified	source_name:N2a_22L N2a_Mock title:N2a_22L vers Mock_rep2 description:RNA isolation, Labelling, Hybridisation and Scanning procedure are described in the fields above
18	GSM171111	N2a_22L vers Mock_rep3	20,355	TU MÃƒÂ¼nchen	2007-02-23	[cDNA Array] GSF/IEG mouse array (GPL3697)	RNA	Mus musculus	unclassified	source_name:N2a_22L N2a_Mock title:N2a_22L vers Mock_rep3 description:RNA isolation, Labelling, Hybridisation and Scanning procedure are described in the fields above
19	GSM171112	N2a_22L vers Mock_rep4	20,355	TU MÃƒÂ¼nchen	2007-02-23	[cDNA Array] GSF/IEG mouse array (GPL3697)	RNA	Mus musculus	unclassified	source_name:N2a_22L N2a_Mock title:N2a_22L vers Mock_rep4 description:RNA isolation, Labelling, Hybridisation and Scanning procedure are described in the fields above
20	GSM171114	N2a_22L vers Mock_rep5	20,355	TU MÃƒÂ¼nchen	2007-02-23	[cDNA Array] GSF/IEG mouse array (GPL3697)	RNA	Mus musculus	unclassified	source_name:N2a_22L N2a_Mock title:N2a_22L vers Mock_rep5 description:RNA isolation, Labelling, Hybridisation and Scanning procedure are described in the fields above

1 | 2 | 3 | 4 | 5 » [59]