Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(718)		   SAGE RsaI
(3)		   SAGE Sau3A
(37)		   MPSS
(100)		   GeneChip
(94,264)		   Tiling Array
(2,050)		   cDNA Array
(11,257)		   Oligo Array
(54,809)		   Bead Array
(14,658)		   Protein Array
(0)		   Antibody
(26)		   RT-PCR
(985)		   HT-Seq
(9,960)		   Other
(425)		   All
(189,292)		  
  brain
(2,153)		   blood
(1,222)		   connective
(441)		   reproductive
(411)		   muscular
(800)		   digestive
(304)		   liver
(1,265)		   lung
(555)		   urinary
(448)		   endo/exo-crine
(315)		   embryo
(369)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(1,155)		   unclassified
(1,819)		   all
(11,257)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM188463 Basal epidermal cells (KitW-v/KitW-v) +UVB (3) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (KitW-v/KitW-v) +UVB (3) (20ug)
2 GSM188464 Basal epidermal cells (Mc1re/Mc1re) +UVB (1) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (Mc1re/Mc1re) +UVB (1) (20ug)
3 GSM188465 Basal epidermal cells (Mc1re/Mc1re) -UVB (2) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (Mc1re/Mc1re) -UVB (2) (20ug)
4 GSM188466 Basal epidermal cells (Mc1re/Mc1re) +UVB (2) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (Mc1re/Mc1re) +UVB (2) (20ug)
5 GSM188467 Basal epidermal cells (Mc1re/Mc1re) -UVB (3) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (Mc1re/Mc1re) -UVB (3) (20ug)
6 GSM188468 Basal epidermal cells (KitW-v/KitW-v) -UVB (1) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (KitW-v/KitW-v) -UVB (1) (20ug)
7 GSM188469 Basal epidermal cells (Mc1re/Mc1re) +UVB (3) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (Mc1re/Mc1re) +UVB (3) (20ug)
8 GSM188471 Basal epidermal cells (KitW-v/KitW-v) -UVB (2) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (KitW-v/KitW-v) -UVB (2) (20ug)
9 GSM188472 Basal epidermal cells (KitW-v/KitW-v) -UVB (3) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (KitW-v/KitW-v) -UVB (3) (20ug)
10 GSM188473 Basal epidermal cells (+/+) -UVB (1) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (+/+) -UVB (1) (20ug)
11 GSM188474 Basal epidermal cells (+/+) -UVB (2) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (+/+) -UVB (2) (20ug)
12 GSM188475 Basal epidermal cells (+/+) +UVB (1) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (+/+) +UVB (1) (20ug)
13 GSM188476 Basal epidermal cells (KitW-v/KitW-v) +UVB (1) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (KitW-v/KitW-v) +UVB (1) (20ug)
14 GSM188477 Basal epidermal cells (+/+) -UVB (3) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (+/+) -UVB (3) (20ug)
15 GSM188478 Basal epidermal cells (+/+) +UVB (2) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (+/+) +UVB (2) (20ug)
16 GSM188479 Basal epidermal cells (KitW-v/KitW-v) +UVB (2) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (KitW-v/KitW-v) +UVB (2) (20ug)
17 GSM188480 Basal epidermal cells (+/+) +UVB (3) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (+/+) +UVB (3) (20ug)
18 GSM188481 Basal epidermal cells (Mc1re/Mc1re) -UVB (1) vs. Reference 42,624 Stanford Microarray Database (SMD) 2007-05-11 [cDNA Array] MMM (GPL3119) RNA Mus musculus
Mus musculus		 pooled Reference (brain, liver, neonate, whole dorsal skin) (20ug) Basal epidermal cells (Mc1re/Mc1re) -UVB (1) (20ug)
19 GSM253504 MMS035TNF2 42,624 Stanford University 2007-12-27 [cDNA Array] Print_850 (GPL6330) RNA Mus musculus
Mus musculus		 pooled 8-12-week-old NOD.BDC2.5 transgenic mice were injected i.p. with PBS or 3 ug murine TNFalpha; on alternate days for three weeks. At day 24 of treatment, suspensions of LNs and/or splenocytes were stimulated with the indicated concentration of the mimotope (1047-7 peptide (YVAPVWVRME)) at a density of 7-8 x 106 cells/ml, in a final volume of 1 ml in 24-well plates. After prolonged in vitro culture, cells were harvested 12 hrs post transplantation. CD4+ T cells were purified by labeling of monoclonal Abs of surface markers, Vbeta4-FITC and CD4-PE and enriched by Magnetic beads selection followed by FACS sorting. The purity of CD4+ T cells ranged from 95% to 99% depending on individual CD4 T cells preparation. The data in column represents six independent repeated experiments with half of the slides being reverse replicates. We compared RNA from PBE treated group with TNF treated group without including reference RNA. Simple annotation: TNF, T-cell Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62241.gif
20 GSM253505 MMS033TNF1 42,624 Stanford University 2007-12-27 [cDNA Array] Print_850 (GPL6330) RNA Mus musculus
Mus musculus		 pooled 8-12-week-old NOD.BDC2.5 transgenic mice were injected i.p. with PBS or 3 ug murine TNFalpha; on alternate days for three weeks. At day 24 of treatment, suspensions of LNs and/or splenocytes were stimulated with the indicated concentration of the mimotope (1047-7 peptide (YVAPVWVRME)) at a density of 7-8 x 106 cells/ml, in a final volume of 1 ml in 24-well plates. After prolonged in vitro culture, cells were harvested 12 hrs post transplantation. CD4+ T cells were purified by labeling of monoclonal Abs of surface markers, Vbeta4-FITC and CD4-PE and enriched by Magnetic beads selection followed by FACS sorting. The purity of CD4+ T cells ranged from 95% to 99% depending on individual CD4 T cells preparation. The data in column represents six independent repeated experiments with half of the slides being reverse replicates. We compared RNA from PBE treated group with TNF treated group without including reference RNA. Simple annotation: TNF, T-cell Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62242.gif
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