Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(23)
  Tiling Array
(11)
  cDNA Array
(71)
  Oligo Array
(177)
  Bead Array
(4)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(122)
  Other
(23)
  All
(433)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Longitudinal analysis of the group A Streptococcus transcriptome (GSE2713) [GeneChip] Affymetrix RML Custom Pathogenic chip 1 (GPL2129) NIAID 2005-05-25 Streptococcus pyogenes,Macaca fascicularis
Streptococcus pyogenes,Macaca fascicularis
4,071,480
(15,720 x 259)
259 by_platform
by_series
2 plant genotype x rhizobium genotype interaction (GSE29027) [GeneChip] [Medicago] Affymetrix Medicago Genome Array (GPL4652) University of Illinois 2011-05-03 Sinorhizobium meliloti,Medicago truncatula
Sinorhizobium meliloti,Medicago truncatula
735,336
(61,278 x 12)
12 by_platform
by_series
3 GBM Xenograft response to 1 hour and 8 hour Cilengitide exposure (GSE12949) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) TGen 2008-09-26 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
656,100
(54,675 x 12)
12 by_platform
by_series
4 Gene expression profiling of HhAntag-treated pancreatic xenografts (GSE11981) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) Genentech, Inc. 2008-07-03 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
437,400
(54,675 x 8)
8 by_platform
by_series
5 Gene expression profiling of HhAntag-treated pancreatic xenografts (GSE11981) [GeneChip] [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Genentech, Inc. 2008-07-03 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
360,808
(45,101 x 8)
8 by_platform
by_series
6 Time-course expression data during assurance of the chronological longevity by caloric restriction in budding yeast (GSE41860) [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) Korea University 2012-10-26 Saccharomyces,unidentified
Saccharomyces,unidentified
262,272
(10,928 x 24)
24 by_platform
by_series
7 Human mesenchymal stem cell-derived matrices for enhanced osteoregeneration (GSE35503) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) Texas A&M 2012-02-02 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
218,700
(54,675 x 4)
4 by_platform
by_series
8 Profiling downregulation of the mevalonate pathway in Staphylococcus aureus (GSE13424) [GeneChip] [S_aureus] Affymetrix S. aureus Genome Array (GPL1339) Novartis Institutes for BioMedical Research 2008-10-31 Staphylococcus aureus,unidentified
Staphylococcus aureus,unidentified
186,600
(7,775 x 24)
24 by_platform
by_series
9 House Dust Mediates Gut Microbiome Lactobacillus johnsonii Enrichment and Immune Defense Against Airway Allergens [Set1] (GSE52906) [GeneChip] [PhyloChip] Affymetrix G2 PhyloChip (Nov2013v) (GPL18000) UCSF 2013-12-03 unidentified,metagenomes
unidentified,metagenomes
153,706
(10,979 x 14)
14 by_platform
by_series
10 Microbial communities in the gut of the beetle Odontotaenius disjunctus (GSE40067) [GeneChip] [PhyloChip] Affymetrix G2 PhyloChip (GPL15537) University of California, Berkeley 2012-08-13 unidentified,metagenomes
unidentified,metagenomes
139,856
(8,741 x 16)
4 12 by_platform
by_series
11 Gene expression of triclosan susceptible and tolerant E. coli O157:H19 in response to triclosan exposure (GSE39343) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) Teagasc Food Research Centre 2012-07-13 Escherichia,unidentified
Escherichia,unidentified
122,496
(10,208 x 12)
12 by_platform
by_series
12 Sinus Microbiome Plays a Primary Role in Rhinosinusitis (GSE37850) [GeneChip] [PhyloChip] Affymetrix G2 PhyloChip (GPL15537) University of California at San Francisco 2012-05-08 Homo sapiens,unidentified
Homo sapiens,unidentified
122,374
(8,741 x 14)
14 by_platform
by_series
13 Transcriptome analysis of pancreatic tumor cell invasion and angiogenesis in the PDAC-CAM model (GSE14509) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) University Bordeaux 1 2009-01-22 Gallus gallus,Homo sapiens
Gallus gallus,Homo sapiens
109,350
(54,675 x 2)
2 by_platform
by_series
14 Transcriptome analysis of pancreatic tumor cell invasion and angiogenesis in the PDAC-CAM model (GSE14509) [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) University Bordeaux 1 2009-01-22 Gallus gallus,Homo sapiens
Gallus gallus,Homo sapiens
77,070
(38,535 x 2)
2 by_platform
by_series
15 Differential expression of genes in the leaves of sugarcane in response to sugar accumulation (GSE11934) [GeneChip] [Sugar_Cane] Affymetrix Sugar Cane Genome Array (GPL3844) University of Oxford 2008-06-30 Saccharum sp.,unidentified
Saccharum sp.,unidentified
67,096
(8,387 x 8)
8 by_platform
by_series
16 Differences in gene expression of delta-fmt and wild-type Staphylococcus aureus RN4220 (GSE41713) [GeneChip] [S_aureus] Affymetrix S. aureus Genome Array (GPL1339) University of Tübingen 2012-10-19 Staphylococcus aureus,unidentified
Staphylococcus aureus,unidentified
62,200
(7,775 x 8)
8 by_platform
by_series
17 Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions (GSE33530) [GeneChip] [4dehalosa520666F] Affymetrix Dehalococcoides genus 4.8K array (GPL10838) University of California, Berkeley 2011-11-08 environmental samples,prokaryotic environmental samples
environmental samples,prokaryotic environmental samples
57,468
(4,789 x 12)
12 by_platform
by_series
18 S. aureus gene expression following growth in media containing oleic acid (GSE36231) [GeneChip] [S_aureus] Affymetrix S. aureus Genome Array (GPL1339) St Jude Children's Research Hospital 2012-03-02 Staphylococcus aureus,unidentified
Staphylococcus aureus,unidentified
46,650
(7,775 x 6)
6 by_platform
by_series
19 Corrinoid salvaging and remodeling by Dehalococcoides mccartyi strain 195 in a defined consortium containing a corrinoid-producer Pelosinus fermentans strain R7 (GSE45533) [GeneChip] [4dehalosa520666F] Affymetrix Dehalococcoides genus 4.8K array (GPL10838) University of California, Berkeley 2013-03-27 unidentified
unidentified
43,101
(4,789 x 9)
9 by_platform
by_series
20 Enterohemorrhagic Escherichia coli (EHEC) 8624 double deletions of kdpe and cra grown in DMEM (GSE43659) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) UTSW 2013-01-22 Escherichia,unidentified
Escherichia,unidentified
30,624
(10,208 x 3)
3 by_platform
by_series
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