| 1 |
GPL3385 |
Hu/Mu ProtIn oligonucleotide microarray |
1,253 |
Wayne State University |
2006-01-24 |
Affymetrix |
Homo sapiens,Mus musculus
 |
GeneChip |
in situ oligonucleotide, Hu/Mu ProtIn oligonucleotide microarray, Dual species array for profiling protease and protease inhibitor gene expression in tumors and their microenvironment. |
| 2 |
GPL8853 |
University of Freiburg - Prochlorococcus microarray - MD4-9313 (MD4-9313a520062) version GC3.0 |
9,918 |
University of Freiburg |
2009-07-14 |
Custom-made high density antisense Affymetrix array |
Prochlorococcus marinus subsp. pastoris str. CCMP1986,Prochlorococcus marinus str. MIT 9313,Prochlorococcus phage P-SSM4,Prochlorococcus phage P-SSP7
 |
GeneChip |
in situ oligonucleotide, University of Freiburg - Prochlorococcus microarray - MD4-9313 (MD4-9313a520062) version GC3.0, |
| 3 |
GPL4335 |
Affymetrix custom made array SFORV2_2 |
10,098 |
University of Chicago |
2006-09-15 |
Affymetrix |
Pan troglodytes,Homo sapiens,Canis lupus familiaris,Rattus norvegicus
 |
GeneChip |
in situ oligonucleotide, Affymetrix custom made array SFORV2_2, |
| 4 |
GPL11094 |
[GLYCOv2a520086F] Custom Affymetrix Glyco v2 GeneChip |
4,682 |
The Scripps Research Institute |
2010-10-22 |
Affymetrix |
Homo sapiens,Mus musculus
|
GeneChip |
in situ oligonucleotide, [GLYCOv2a520086F] Custom Affymetrix Glyco v2 GeneChip, The Glyco v2 array was designed in 2003 and consists of probesets targeting genes coding for glycosyl transferases, carbohydrate binding proteins, glycan degradation enzymes, nucleotide sugar transporters, mucins, adhesion molecules, chemokines, cytokines, growth factors and their receptors, interleukins and their receptors and proteoglycans. In addition, a set of "housekeeping" and control genes are included on the array. The array contains probe set for both mouse and human gene sequences and can be use to analyze RNA from both species. Most of the human and mouse probe sets on the Glyco v2 array were taken directly from the v1 array (based on commercial U133A,B human array) with some probesets designed by Affymetrix from accessions for genes not well represented by the U133A,B. Additional carbohydrate related genes were added to the v2 array relative to the v1 array. In most cases, probesets consist of 11 probe pairs designed using the Perfect Match/Mismatch approach developed by Affymetrix. Immediately prior to our deadline for submittal of the v2 array design, Affymetrix introduced format changes to their custom array product line that substantially increased the available space on the v2 array. To address we represented most probe sets in triplicate or duplicate on the array. For example, the probe set for thrombomodulin (THBD) appears as: 203887 _Copy1_at, 203887 _Copy2_at, 203887 _Copy3_at where each copy represents an identical and independent set of probe pairs targeting the thrombomodulin transcript. |
| 5 |
GPL11093 |
[scrGLYCO-v1F] Custom Affymetrix Glyco v1 GeneChip |
1,814 |
The Scripps Research Institute |
2010-10-22 |
Affymetrix |
Homo sapiens,Mus musculus
|
GeneChip |
in situ oligonucleotide, [scrGLYCO-v1F] Custom Affymetrix Glyco v1 GeneChip, The Glyco v1 array was designed in 2001 and consists of 3' probesets targeting genes coding for glycosyl transferases, carbohydrate binding proteins, glycan degradation enzymes, nucleotide sugar transporters, mucins, adhesion molecules, chemokines, cytokines, growth factors and their receptors, interleukins and their receptors and proteoglycans. In addition, a set of "housekeeping" and control genes are included on the array. The array contains probe set for both mouse and human gene sequences and can be use to analyze RNA from either species. Most of the human probe sets on the Glyco v1 array were taken directly from the commercial U133A,B human array although a substantial number of the probesets were custom designed by Affymetrix from accessions for genes not well represented by the U133A,B. At the time, the Mouse 430 array had not yet been released by Affymetrix so mouse probesets were all custom designed by Affymetrix for this array using the U133A,B design algorithms. In most cases, probesets consist of 11 probe pairs designed using the Perfect Match/Mismatch approach developed by Affymetrix. |
| 6 |
GPL1981 |
GLYCOv1 glycogene array |
1,814 |
The Scripps Research Institute |
2005-04-21 |
Affymetrix |
Homo sapiens,Mus musculus
|
GeneChip |
in situ oligonucleotide, GLYCOv1 glycogene array, A custom-designed Glyco-gene Chip array that contains probe sets to monitor the expression of human and mouse transcripts relevant to the Consortium for Functional Glycomics.The following classes of genes are represented on the GLYCOv1 Gene Chip: Glycosyltransferases Glycan-binding proteins (GBP) Sulfotransferases C-type lectins Neuraminidases Nucleotide sugar synthesis and transporter proteins N-glycan biosynthesis related genes Mucins Proteoglycans Growth factors Cytokines Chemokines and Conserved oligomeric Golgi (COG) complex genes. Available as a resource throught the Consortium of Functional Glycomics. See this URL for complete information http://web.mit.edu/glycomics/consortium/ |
| 7 |
GPL5471 |
MIT-Chisholm Lab Prochlorococcus and cyanophage microarray - MD4-9313 (MD4-9313a520062) |
9,947 |
Technion - Israel Institute of Technology |
2007-07-05 |
Custom-made high density antisense Affymetrix array |
Prochlorococcus marinus subsp. pastoris str. CCMP1986,Prochlorococcus marinus str. MIT 9313,Prochlorococcus phage P-SSM4,Prochlorococcus phage P-SSP7
|
GeneChip |
in situ oligonucleotide, MIT-Chisholm Lab Prochlorococcus and cyanophage microarray - MD4-9313 (MD4-9313a520062), Array format - Midi; Synthesis area - 8.1 mm; Feature size - 18 micron |
| 8 |
GPL9757 |
[stSmel_Mtra] SRL_SU Sinorhizobium meliloti/Medicago truncatula dual-genome SymbiosisChip, Affymetrix part number 510699 |
22,973 |
Stanford University |
2009-12-07 |
Affymetrix |
Sinorhizobium meliloti,Medicago truncatula
 |
GeneChip |
in situ oligonucleotide, [stSmel_Mtra] SRL_SU Sinorhizobium meliloti/Medicago truncatula dual-genome SymbiosisChip, Affymetrix part number 510699, The dual genome Affymetrix SymbiosisChip contains probe sets for S. meliloti ORFs annotated in 2001, intergenic regions over 150 bp, and ~10,000 probe sets corresponding to expressed sequence tags of the plant host, Medicago truncatula. |
| 9 |
GPL11412 |
Prochlorococcus microarray 11K |
10,793 |
MIT |
2011-01-10 |
Affymetrix |
Prochlorococcus marinus subsp. pastoris str. CCMP1986,Prochlorococcus marinus str. MIT 9313,Prochlorococcus phage P-SSM4,Prochlorococcus phage P-SSP7
|
GeneChip |
in situ oligonucleotide, Prochlorococcus microarray 11K, |
| 10 |
GPL9735 |
Ambion 14K miRChip V1 |
14,215 |
Asuragen Inc. |
2009-12-01 |
Affymetrix |
Homo sapiens,Mus musculus,Rattus norvegicus,synthetic construct
 |
GeneChip |
in situ oligonucleotide, Ambion 14K miRChip V1, |
| 11 |
GPL4652 |
[Medicago] Affymetrix Medicago Genome Array |
61,278 |
Affymetrix, Inc. |
2006-12-08 |
Affymetrix |
Sinorhizobium meliloti,Medicago sativa,Medicago truncatula
 |
GeneChip |
in situ oligonucleotide, [Medicago] Affymetrix Medicago Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip Medicago Genome Array is designed specifically to monitor gene expression in Medicago truncatula, Medicago sativa, and the symbiotic organism Sinorhizobium meliloti. The Medicago Genome Array is particularly useful for agriculture researchers studying legume genomics and symbiotic relationships between nitrogen fixing bacteria and plants. Sequence information for this array was selected from data sources including the TIGR M. truncatula gene index (The Institute for Genomic Research, January 2005), gene predictions from the International Medicago Genome Annotation Group (IMGAG), gene predictions from the S. meliloti genome, and M. sativa EST information made available by TIGR. The array contains over 61,200 probe sets: 32,167 M. truncatula EST/mRNA-based and chloroplast gene-based probe sets; 18,733 M. truncatula IMGAG and phase 2/3 BAC prediction-based probe sets; 1,896 M. sativa EST/mRNA-based probe sets; and 8,305 S. meliloti gene prediction-based probe sets. |
|