Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2,493)		   Primates
(32)		   Rodents
(1,163)		   Mammals
(177)		   Vertebrates
(223)		   Invertebrates
(747)		   Plants
(1,466)		   Bacteria
(1,100)		   Viruses
(67)		   Phages
(3)		   Unclassified
(263)		   All
(7,761)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(9)		   Tiling Array
(3)		   cDNA Array
(14)		   Oligo Array
(114)		   Bead Array
(2)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(1)		   HT-Seq
(91)		   Other
(28)		   All
(263)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11674 UW/NimbleGen_humangorilla_custom_dupsdels 2,097,383 University of Washington 2011-01-31 Nimblegen Gorilla gorilla,Homo sapiens
Gorilla gorilla,Homo sapiens		 Oligo Array in situ oligonucleotide, UW/NimbleGen_humangorilla_custom_dupsdels,
2 GPL6898 UC multi-primate Nimblegen microarray 388K 388,678 University of Chicago 2008-05-26 Nimblegen Macaca mulatta,Pan troglodytes,Homo sapiens
Macaca mulatta,Pan troglodytes,Homo sapiens		 Oligo Array spotted oligonucleotide, UC multi-primate Nimblegen microarray 388K,
3 GPL1447 Drosophila 200K high density 36mer oligo array 193,866 Yale 2004-09-14
Oligo Array spotted oligonucleotide, Drosophila 200K high density 36mer oligo array, synthesized oligonucleotide array on glass. This set includes 200,000 oligonucleotides, uniquely identified 36-mers. Keywords = high density oligonucleotide
4 GPL10749 Human-mouse dual-species array HomoMus_v2 92,852 University of Chicago 2010-08-02 Agilent Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 Oligo Array in situ oligonucleotide, Human-mouse dual-species array HomoMus_v2, Customized Agilent array designed using eArray software
5 GPL10714 [Agilent-021439] University of Chicago-Dual Species (Homo sapiens and Mus musculus) 87K array 87,107 University of Chicago 2010-07-21 Agilent Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 Oligo Array in situ oligonucleotide, [Agilent-021439] University of Chicago-Dual Species (Homo sapiens and Mus musculus) 87K array,
6 GPL15558 NimbleGen MM9/HG18 Chimeric Array [110330_MM9_HuMA_M] 51,121 Thomas Jefferson University 2012-05-11 NimbleGen Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 Oligo Array in situ oligonucleotide, NimbleGen MM9/HG18 Chimeric Array [110330_MM9_HuMA_M], NimbleGen Design name: 110330_MM9_HuMA_M NimbleGen Design ID: 550681 Genome builds: Human hg18, Mouse mm9 HX3 expression design for mm9 sequences; a sister design to 550671; contains the same probes as 550671 except the HG180902_prime3_best_5_probes set is replaced by Selected_5_mouse_from_090310_HG18_MM9_expr, and the mouse_*_expr_probes are replaced by humanliver_*_expr_probes. Two copies of each experimental probe, one copy of each random probe on the array. Because there are fewer probes on this array than 550671, there are some empty features.
7 GPL10576 Agilent-025993 biofilm_v2 45,220 Agilent Technologies 2010-06-22 Agilent Technologies Bacillariophyta,Chlorophyta,Chlamydomonas,unidentified
Bacillariophyta,Chlorophyta,Chlamydomonas,unidentified		 Oligo Array in situ oligonucleotide, Agilent-025993 biofilm_v2, probes for chlamydomonas genome, EST sequences of Scenedesmus obliquus and functional genes for diatoms and green algae Arrays of this design have barcodes that begin with 16025993 or 2525993. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
8 GPL10805 Agilent-024504 Yersinia_CGH_20090707 45,220 J. Craig Venter Institute 2010-08-13 Agilent Technologies
Oligo Array in situ oligonucleotide, Agilent-024504 Yersinia_CGH_20090707, Yersinia species CGH array. Arrays of this design have barcodes that begin with 16024504 or 2524504.. Orientation:. Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.. The ID column represents the Agilent Feature Extraction feature number.. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).. To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions..
9 GPL11486 NIAID Cnda -- Agilent Cryptococcus neoformans var. grubii H99 44K Oligo Microarray 44,886 National Institute of Allergy and Infectious Diseases 2011-01-14 Agilent Technologies Homo sapiens,Mus musculus,Cryptococcus neoformans var. grubii H99
Homo sapiens,Mus musculus,Cryptococcus neoformans var. grubii H99		 Oligo Array in situ oligonucleotide, NIAID Cnda -- Agilent Cryptococcus neoformans var. grubii H99 44K Oligo Microarray, Cryptococcus neoformans var grubii H99 transcript sequences were downloaded from the BROAD Institute website for this custom array. Hybridization probe sequences(60-mer) were selected using e-Array software (Agilent): two for each of the 6,969 transcripts, one of them strongly 3-prime biased (best probe methodology) the other less so (best distribution methodology). The 13,938 unique probes were arrayed in 3 replicate, randomized, locations on the Agilent Sure-Print microarray slide, 4x44K format. Additional control probes were included as well. Agilent designID: 025949
10 GPL8223 NimbleGen Plasmodium yoelii + Mus musculus 189K array v1.0 32,651 SBRI 2009-02-24 NimbleGen Plasmodium yoelii,Mus musculus
Plasmodium yoelii,Mus musculus		 Oligo Array in situ oligonucleotide, NimbleGen Plasmodium yoelii + Mus musculus 189K array v1.0, NimbleGen design name 2006-05-15_Tarun_Plasmodium, NimbleGen design ID 3624. Expression design for P. berghei and P. yoelli with 12 probes/gene. Additional control probes were included in separate containers. 100 copies of GFP probes (12/species) were included in the eGFP container. Design also contains 188,608 60mer probes representing 32,650 transcripts from mouse.
11 GPL14978 NimbleGen Rana muscosa/sierrae 12-plex Oligo Custom Expression Array [100211_RM_MS_EXP] 29,258 University of Idaho 2011-12-07 NimbleGen Rana muscosa,unidentified
Rana muscosa,unidentified		 Oligo Array in situ oligonucleotide, NimbleGen Rana muscosa/sierrae 12-plex Oligo Custom Expression Array [100211_RM_MS_EXP], The microarray contained 127,867 60-mer probes representing a possible 29,259 expressed transcripts (probe sets). Probe sets were defined as all probes that mapped to a single transcript, which in turn mapped to a single gene. Probe sequences within the ndf file. SLIDE_LAYOUT_NAME: NimbleChip_HX12 DESIGN_NAME: 100211_RM_MS_EXP DESIGN_ID: 11375
12 GPL10183 Agilent TNPRC Macaca mulatta 4x44k Array [Probe Name version] 20,217 Tulane National Primate Research Center 2010-03-15 Agilent Technologies Macaca mulatta,Homo sapiens
Macaca mulatta,Homo sapiens		 Oligo Array spotted oligonucleotide, Agilent TNPRC Macaca mulatta 4x44k Array [Probe Name version], 43,803 rhesus macaque monkey probes are represented on this chip.
13 GPL6253 JCVI PFGRC Plasmodium Sal-1 18K v1 array designed primarily based on strain Sal-1 17,218 J. Craig Venter Institute 2007-12-06 JCVI PFGRC unidentified
unidentified		 Oligo Array spotted oligonucleotide, JCVI PFGRC Plasmodium Sal-1 18K v1 array designed primarily based on strain Sal-1, This set includes 16120 oligonucleotides, has 18240 spots distributed in 48 blocks.
14 GPL14692 Agilent_028085 Ketogulonigenium vulgare custom microarray [Feature Number version] 15,744 Arraystar Inc. 2011-10-10 Agilent Technologies unidentified
unidentified		 Oligo Array in situ oligonucleotide, Agilent_028085 Ketogulonigenium vulgare custom microarray [Feature Number version], The Ketogulonigenium vulgarum WSH-001 custom Microarray is a broad view that represents well-known and predicted Ketogulonigenium vulgarum WSH-001 genes and transcripts. Coupled with NCBI’s gene prediction processes and Agilent's probe selection, this design delivers increased data quality and less gene coverage redundancy. Design ID : 028085 ***A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL14693.
15 GPL10388 Roche NimbleGen_Custom designed R. microplus_12x135K HD2 array 15,535 Washington State University 2010-05-05 NimbleGen Rhipicephalus microplus,Anaplasma marginale str. St. Maries
Rhipicephalus microplus,Anaplasma marginale str. St. Maries		 Oligo Array in situ oligonucleotide, Roche NimbleGen_Custom designed R. microplus_12x135K HD2 array, NimbleGen design name 090120_Amar_Bmic_RFMC, NimbleGen design ID 19181. A Roche NimbleGen high-density gene expression microarray custom designed for 14,447 genes based on the expressed sequence tag (EST) database, B. microplus Gene Index Version 2 (BmiGI V2) for R. microplus. Eight 60-mer probe per gene; each probe is replicated 1 time. The design includes random GC and other control probes.
16 GPL15478 University of Illinois/Haifa University Spalax galili Agilent 8x15K microarray 15,257 University of Illinois 2012-04-20 Agilent unidentified
unidentified		 Oligo Array in situ oligonucleotide, University of Illinois/Haifa University Spalax galili Agilent 8x15K microarray, Spalax galili 8 x 15K oligo microarray
17 GPL15030 Agilent Human, KSHV, and EBV 44K AMADID #027774 14,601 University of Pittsburgh 2011-12-19 Agilent Technologies Homo sapiens,Human herpesvirus 4,Human herpesvirus 8
Homo sapiens,Human herpesvirus 4,Human herpesvirus 8		 Oligo Array in situ oligonucleotide, Agilent Human, KSHV, and EBV 44K AMADID #027774,
18 GPL9108 UW CombiMatrix Candidatus Accumulibacter phosphatis 12.5K 12,544 University of Wisconsin-Madison 2009-08-26 CombiMatrix uncultured bacterium,Candidatus Accumulibacter phosphatis
uncultured bacterium,Candidatus Accumulibacter phosphatis		 Oligo Array in situ oligonucleotide, UW CombiMatrix Candidatus Accumulibacter phosphatis 12.5K,
19 GPL4700 OSU-CCC MicroRNA Microarray Version 2.0 11,520 National Cancer Institute 2006-12-26 Microarray Shared Resource, Comprehensive Cancer Center, The Ohio State University (OSU-CCC) Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 Oligo Array spotted oligonucleotide, OSU-CCC MicroRNA Microarray Version 2.0,
20 GPL5180 OSU-CCC hsa-miRNA-chip version 3 11,520 NIH 2007-05-18 Microarray Shared Resource, Comprehensive Cancer Center, The Ohio State University (OSU-CCC) Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 Oligo Array spotted oligonucleotide, OSU-CCC hsa-miRNA-chip version 3,
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