Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(9,415)		   Primates
(146)		   Rodents
(6,860)		   Mammals
(282)		   Vertebrates
(526)		   Invertebrates
(1,776)		   Plants
(2,898)		   Bacteria
(1,674)		   Viruses
(30)		   Phages
(1)		   Unclassified
(143)		   All
(23,779)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(11)		   Tiling Array
(7)		   cDNA Array
(32)		   Oligo Array
(53)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(36)		   Other
(1)		   All
(143)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Comparative transcriptional analysis of Desulfovibrio G20 grown under syntrophic and respiratory condtions (GSE42571) [Oligo Array] NimbleGen Custom Desulfovibrio alaskensis str. G20 4-plex [080626_Ddes_G20_EXP] (GPL16334) Lawrence Berkeley Lab 2012-11-28 Desulfovibrio,unidentified
Desulfovibrio,unidentified		 29,184
(3,648 x 8) 		8 by_platform
by_series
2 Ammonia oxidizing archaeal community composition in Gulf of Mexico sediments investigated with an amoA functional gene microarray (GSE42286) [Oligo Array] Princeton Microarray Facility AOA Archetype Microarray BC014 (GPL16281) Boston University 2012-11-14 synthetic construct,uncultured ammonia-oxidizing archaeon
synthetic construct,uncultured ammonia-oxidizing archaeon		 465
(31 x 15) 		15 by_platform
by_series
3 Depth Distribution of Ammonia Oxidation Rates and Ammonia-Oxidizer Community Composition in the Sargasso Sea (GSE42287) [Oligo Array] Princeton Microarray Facility AOA Archetype Microarray BC015 (GPL16282) Boston University 2012-11-14 synthetic construct,uncultured ammonia-oxidizing archaeon
synthetic construct,uncultured ammonia-oxidizing archaeon		 248
(31 x 8) 		8 by_platform
by_series
4 Gene expression profiling of a nisin-sensitive Listeria monocytogenes Scott A ctsR deletion mutant (GSE41891) [Oligo Array] Listeria monocytogenes strain F2365 5.6K (GPL6489) ERRS-ARS-USDA 2012-10-28 Listeria monocytogenes,unidentified
Listeria monocytogenes,unidentified		 22,552
(5,638 x 4) 		4 by_platform
by_series
5 Linkage of genomic biomarkers to whole organism endpoints in a Toxicity Identification Evaluation (TIE) (GSE41463) [Oligo Array] Agilent-020996 USEPA Ampelisca abdita 8 x15k 60mer v1.0 (G2509F) (GPL16161) US Environmental Protection Agency 2012-10-10 Ampelisca,unidentified
Ampelisca,unidentified		 1,110,001
(7,351 x 151) 		3 148 by_platform
by_series
6 The relationship between inhibition of gastric acid secretion and eradication of Helicobacter pylori (GSE39512) [Oligo Array] Agilent-031749 Hp695 3 probes [Probe Name version] (GPL15831) UCLA/VA GLAHS 2012-07-19 Helicobacter pylori,unidentified
Helicobacter pylori,unidentified		 106,040
(4,820 x 22) 		22 by_platform
by_series
7 Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS (GSE38633) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 331,776
(27,648 x 12) 		12 by_platform
by_series
8 The GacA transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces (GSE38630) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 165,888
(27,648 x 6) 		6 by_platform
by_series
9 The rpoS transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces (GSE38631) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 165,888
(27,648 x 6) 		6 by_platform
by_series
10 The rpoS transcriptome of Pseudomonas protegens Pf-5 grown in rich medium (GSE38632) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 139,392
(23,232 x 6) 		6 by_platform
by_series
11 Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS (GSE38633) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 139,392
(23,232 x 6) 		6 by_platform
by_series
12 Evolutionary principles of modular gene regulation in Yeasts (GSE38478) [Oligo Array] Agilent Custom Gene Expression Array for Saccharomyces castellii (GPL10501) Broad Institute 2012-06-05 unidentified
unidentified		 193,392
(5,688 x 34) 		34 by_platform
by_series
13 Expression analysis of tumor microenvironment in triple-negative breast carcinoma in xenograft model (GSE37937) [Oligo Array] NimbleGen MM9/HG18 Chimeric Array [110330_MM9_HuMA_M] (GPL15558) Thomas Jefferson University 2012-05-11 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 613,452
(51,121 x 12) 		12 by_platform
by_series
14 Spalax gene expression profiling of muscle and brain under hypoxia (GSE37619) [Oligo Array] University of Illinois/Haifa University Spalax galili Agilent 8x15K microarray (GPL15478) University of Illinois 2012-04-26 Nannospalax,unidentified
Nannospalax,unidentified		 244,112
(15,257 x 16) 		8 8 by_platform
by_series
15 Mycobacterium tuberculosis Requires Phosphate-Responsive Gene Regulation to Resist Host Immunity (GSE36998) [Oligo Array] Voskuil Lab Mycobacterium tuberculosis Operon Microarray (GPL15398) University of Colorado Denver 2012-04-03 unidentified
unidentified		 49,555
(4,505 x 11) 		11 by_platform
by_series
16 Custom Agilent array-CGH of somatic cell hybrids targeted to 17q21.31 deletion syndrome locus (GSE34867) [Oligo Array] Agilent-027929 AI_hybridCell_17q21_v3 (GPL15086) University of Washington School of Medicine 2012-01-04 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 2,191,536
(243,504 x 9) 		9 by_platform
by_series
17 L. monocytogenes ctsR mutant 2-1 cells response to pressure (GSE32172) [Oligo Array] Listeria monocytogenes strain F2365 5.6K (GPL6489) ERRS-ARS-USDA 2011-09-15 Listeria monocytogenes,unidentified
Listeria monocytogenes,unidentified		 11,276
(5,638 x 2) 		2 by_platform
by_series
18 HCMV infection of human neural precursor cells: HCMV expression (GSE31141) [Oligo Array] PHRI-UMNDJ Human cytomegalovirus 1.5K CAG_HCMV [gene-level] (GPL15366) Center for Applied Genomics 2011-08-02 unidentified,Human herpesvirus 5
unidentified,Human herpesvirus 5		 570
(285 x 2) 		2 by_platform
by_series
19 HCMV infection of human neural precursor cells (GSE31142) [Oligo Array] PHRI-UMNDJ Human cytomegalovirus 1.5K CAG_HCMV [gene-level] (GPL15366) Center for Applied Genomics 2011-08-02 unidentified,Human herpesvirus 5
unidentified,Human herpesvirus 5		 570
(285 x 2) 		2 by_platform
by_series
20 Development of a xenograft model for clinical oligo- and poly-metastatic progression (GSE29890) [Oligo Array] Human-mouse dual-species array HomoMus_v2 (GPL10749) universty of Chicago 2011-06-10 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 742,816
(92,852 x 8) 		8 by_platform
by_series
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