Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)		   Primates
(39)		   Rodents
(1,779)		   Mammals
(312)		   Vertebrates
(411)		   Invertebrates
(1,032)		   Plants
(2,239)		   Bacteria
(1,690)		   Viruses
(78)		   Phages
(8)		   Unclassified
(430)		   All
(11,831)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(12)		   Tiling Array
(4)		   cDNA Array
(35)		   Oligo Array
(229)		   Bead Array
(2)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(4)		   HT-Seq
(102)		   Other
(40)		   All
(430)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10086 Applied Biosystems Human and Rodent TaqMan Low Denisty microRNA Microarray 381 Brain and Mind Research Institute, University of Sydney 2010-02-22 Applied Biosystems Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, Applied Biosystems Human and Rodent TaqMan Low Denisty microRNA Microarray,
2 GPL8952 miRNA profile from LPS-treated Akt1-/- macrophages 364 University of Crete 2009-07-30 Dana Farber Genomics Facility Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, miRNA profile from LPS-treated Akt1-/- macrophages,
3 GPL4404 GUELPH Bovine 180 immune-endocrine microarray 180 University of Guelph 2006-10-09 Immunogenetics lab, Department of Pathobiology, Universitu of Guelph Arabidopsis thaliana,Bos taurus
Arabidopsis thaliana,Bos taurus		 RT-PCR spotted DNA/cDNA, GUELPH Bovine 180 immune-endocrine microarray, The in-house microarray consists of 167 RT-PCR derived DNA fragments representing 167 ORFs from bovine. The DNA fragments are printed 4 times on the surface of the microarray (four-replicate blocks). The 167 immune and endocrine genes grouped into the following categories: cytokine genes, chemoattractants or chemokines and their respective receptor genes, immune regulatory genes, T-cell associated genes, pattern recognition or innate host defense genes, immunglobin (Ig) or Ig-related genes, complement genes, antigen processing or presenting genes, and genes encoding endocrine hormones or their receptors. As positive controls, the array includes 5 “housekeeping” genes (GAPDH, HPRT, PRL19, β-actin, β2-microglobulin), negative controls consisted of a Rhodococcus equi 17kD virulence protein gene, plasmid pACYC177 DNA, and a thaliana photosystem I chlorophyll a/b-binding protein gene, and the FcRgII gene intron. The printing controls included serially diluted bovine genomic DNA, and printing buffer only.
4 GPL13296 TaqMan® Array Human/Mouse MicroRNA Panel (custom early version) 150 Stanford University 2011-03-18 Applied Biosystems Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 RT-PCR RT-PCR, TaqMan® Array Human/Mouse MicroRNA Panel (custom early version),
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