Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(13)
  Tiling Array
(6)
  cDNA Array
(42)
  Oligo Array
(267)
  Bead Array
(2)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(4)
  HT-Seq
(159)
  Other
(46)
  All
(542)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL15824 NimbleGen Custom Desulfovibrio alaskensis G20 Tiling [NimbleGen_G20_2082K_1] 2,005,818 Lawrence Berkeley Lab 2012-07-18 NimbleGen unidentified
unidentified
Tiling Array in situ oligonucleotide, NimbleGen Custom Desulfovibrio alaskensis G20 Tiling [NimbleGen_G20_2082K_1], NC_007519 100318_DdesG20_JK_EXP_HX1.ndf
2 GPL17859 091006_AD_ZM4_2_1M_exp_HX1 1,870,443 Lawrence Berkeley Lab 2013-10-29 NimbleGen unidentified
unidentified
Tiling Array in situ oligonucleotide, 091006_AD_ZM4_2_1M_exp_HX1, Genome sequence from refseq (main chromosome and 5 plasmids) Analysis was not based on gene annotation except that only coding probes were used to build the model of how genomic control intensity affects tiling intensity native array description file = 091006_AD_ZM4_2_1M_exp_HX1.ndf
3 GPL16934 Agilent-032729 (Lactococcus lactis subsp. cremoris UC509.9, Lactococcus phage Tuc2009, Lactococcus phage c2) 45,220 Radboud University Medical Centre 2013-03-29 Agilent Technologies Lactococcus phage c2,Lactococcus phage Tuc2009,unidentified
Lactococcus phage c2,Lactococcus phage Tuc2009,unidentified
Tiling Array in situ oligonucleotide, Agilent-032729 (Lactococcus lactis subsp. cremoris UC509.9, Lactococcus phage Tuc2009, Lactococcus phage c2), uc509 gene array and tuc2009/c2 tiling array Arrays of this design have barcodes that begin with 16032729 or 2532729. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
4 GPL16894 Agilent-029238 KSHV tiling microarray 13,810 Novartis Institutes for BioMedical Research 2013-03-28 Agilent Technologies Homo sapiens,unidentified
Homo sapiens,unidentified
Tiling Array in situ oligonucleotide, Agilent-029238 KSHV tiling microarray, KSHV tiling microarray AMADID: 029238
5 GPL10083 KSHV tiling microarray AMADID: 017577 13,746 UCSF 2010-02-22 Agilent Technologies Homo sapiens,Human herpesvirus 8 type M
Homo sapiens,Human herpesvirus 8 type M
Tiling Array in situ oligonucleotide, KSHV tiling microarray AMADID: 017577, Probes based on KSHV (U75698.1) and Homo sapiens for select human transcripts.
6 GPL16018 Agilent-029585 BosTaurus_AlHV-1_60K_v1.0 62,976 University of Liege 2012-09-05 Agilent Bos taurus,Alcelaphine herpesvirus 1
Bos taurus,Alcelaphine herpesvirus 1
Tiling Array in situ oligonucleotide, Agilent-029585 BosTaurus_AlHV-1_60K_v1.0, The microarray was custom designed for Agilent 8x60K slides. It targets both AlHV-1 by tiling array and Bos taurus transcripts: the AlHV-1 tiling has a 15bp sliding step between each 60-mer probe; Bos taurus transcripts were targeted with all 60-mer probes from Agilent's B. taurus (Bovine) Oligo Microarray v2_1. Probe design was performed by Agilent.