Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(11)		   Tiling Array
(4)		   cDNA Array
(35)		   Oligo Array
(221)		   Bead Array
(2)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(4)		   HT-Seq
(91)		   Other
(29)		   All
(399)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11674 UW/NimbleGen_humangorilla_custom_dupsdels 2,097,383 University of Washington 2011-01-31 Nimblegen Gorilla gorilla,Homo sapiens
Gorilla gorilla,Homo sapiens		 Oligo Array in situ oligonucleotide, UW/NimbleGen_humangorilla_custom_dupsdels,
2 GPL15824 NimbleGen Custom Desulfovibrio alaskensis G20 Tiling [NimbleGen_G20_2082K_1] 2,005,818 Lawrence Berkeley Lab 2012-07-18 NimbleGen unidentified
unidentified		 Tiling Array in situ oligonucleotide, NimbleGen Custom Desulfovibrio alaskensis G20 Tiling [NimbleGen_G20_2082K_1], NC_007519 100318_DdesG20_JK_EXP_HX1.ndf
3 GPL6898 UC multi-primate Nimblegen microarray 388K 388,678 University of Chicago 2008-05-26 Nimblegen Macaca mulatta,Pan troglodytes,Homo sapiens
Macaca mulatta,Pan troglodytes,Homo sapiens		 Oligo Array spotted oligonucleotide, UC multi-primate Nimblegen microarray 388K,
4 GPL6680 BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 339,153 BC Cancer Agency 2008-04-03 NimbleGen Systems, Inc. Pseudomonas aeruginosa,Escherichia coli,Haemophilus influenzae,Homo sapiens
Pseudomonas aeruginosa,Escherichia coli,Haemophilus influenzae,Homo sapiens		 Oligo Array spotted oligonucleotide, BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1,
5 GPL1447 Drosophila 200K high density 36mer oligo array 193,866 Yale 2004-09-14
Oligo Array spotted oligonucleotide, Drosophila 200K high density 36mer oligo array, synthesized oligonucleotide array on glass. This set includes 200,000 oligonucleotides, uniquely identified 36-mers. Keywords = high density oligonucleotide
6 GPL10749 Human-mouse dual-species array HomoMus_v2 92,852 University of Chicago 2010-08-02 Agilent Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 Oligo Array in situ oligonucleotide, Human-mouse dual-species array HomoMus_v2, Customized Agilent array designed using eArray software
7 GPL10714 [Agilent-021439] University of Chicago-Dual Species (Homo sapiens and Mus musculus) 87K array 87,107 University of Chicago 2010-07-21 Agilent Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 Oligo Array in situ oligonucleotide, [Agilent-021439] University of Chicago-Dual Species (Homo sapiens and Mus musculus) 87K array,
8 GPL16018 Agilent-029585 BosTaurus_AlHV-1_60K_v1.0 62,976 University of Liege 2012-09-05 Agilent Bos taurus,Alcelaphine herpesvirus 1
Bos taurus,Alcelaphine herpesvirus 1		 Tiling Array in situ oligonucleotide, Agilent-029585 BosTaurus_AlHV-1_60K_v1.0, The microarray was custom designed for Agilent 8x60K slides. It targets both AlHV-1 by tiling array and Bos taurus transcripts: the AlHV-1 tiling has a 15bp sliding step between each 60-mer probe; Bos taurus transcripts were targeted with all 60-mer probes from Agilent's B. taurus (Bovine) Oligo Microarray v2_1. Probe design was performed by Agilent.
9 GPL4652 [Medicago] Affymetrix Medicago Genome Array 61,278 Affymetrix, Inc. 2006-12-08 Affymetrix Sinorhizobium meliloti,Medicago sativa,Medicago truncatula
Sinorhizobium meliloti,Medicago sativa,Medicago truncatula		 GeneChip in situ oligonucleotide, [Medicago] Affymetrix Medicago Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip Medicago Genome Array is designed specifically to monitor gene expression in Medicago truncatula, Medicago sativa, and the symbiotic organism Sinorhizobium meliloti. The Medicago Genome Array is particularly useful for agriculture researchers studying legume genomics and symbiotic relationships between nitrogen fixing bacteria and plants. Sequence information for this array was selected from data sources including the TIGR M. truncatula gene index (The Institute for Genomic Research, January 2005), gene predictions from the International Medicago Genome Annotation Group (IMGAG), gene predictions from the S. meliloti genome, and M. sativa EST information made available by TIGR. The array contains over 61,200 probe sets: 32,167 M. truncatula EST/mRNA-based and chloroplast gene-based probe sets; 18,733 M. truncatula IMGAG and phase 2/3 BAC prediction-based probe sets; 1,896 M. sativa EST/mRNA-based probe sets; and 8,305 S. meliloti gene prediction-based probe sets.
10 GPL14113 Agilent-030829 Human, Rat and Mouse 8x60k Oligo Microarray [multiple species] 59,500 Tokyo Institute of Technology 2011-08-04 Agilent Technologies Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 Oligo Array in situ oligonucleotide, Agilent-030829 Human, Rat and Mouse 8x60k Oligo Microarray [multiple species],
11 GPL15558 NimbleGen MM9/HG18 Chimeric Array [110330_MM9_HuMA_M] 51,121 Thomas Jefferson University 2012-05-11 NimbleGen Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 Oligo Array in situ oligonucleotide, NimbleGen MM9/HG18 Chimeric Array [110330_MM9_HuMA_M], NimbleGen Design name: 110330_MM9_HuMA_M NimbleGen Design ID: 550681 Genome builds: Human hg18, Mouse mm9 HX3 expression design for mm9 sequences; a sister design to 550671; contains the same probes as 550671 except the HG180902_prime3_best_5_probes set is replaced by Selected_5_mouse_from_090310_HG18_MM9_expr, and the mouse_*_expr_probes are replaced by humanliver_*_expr_probes. Two copies of each experimental probe, one copy of each random probe on the array. Because there are fewer probes on this array than 550671, there are some empty features.
12 GPL10576 Agilent-025993 biofilm_v2 45,220 Agilent Technologies 2010-06-22 Agilent Technologies Bacillariophyta,Chlorophyta,Chlamydomonas,unidentified
Bacillariophyta,Chlorophyta,Chlamydomonas,unidentified		 Oligo Array in situ oligonucleotide, Agilent-025993 biofilm_v2, probes for chlamydomonas genome, EST sequences of Scenedesmus obliquus and functional genes for diatoms and green algae Arrays of this design have barcodes that begin with 16025993 or 2525993. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
13 GPL10805 Agilent-024504 Yersinia_CGH_20090707 45,220 J. Craig Venter Institute 2010-08-13 Agilent Technologies
Oligo Array in situ oligonucleotide, Agilent-024504 Yersinia_CGH_20090707, Yersinia species CGH array. Arrays of this design have barcodes that begin with 16024504 or 2524504.. Orientation:. Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.. The ID column represents the Agilent Feature Extraction feature number.. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).. To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions..
14 GPL15092 Agilent-031544 Custom Plasmodium berghei str. ANKA array [PBANKA1] 45,220 mie university 2012-01-05 Agilent Technologies unidentified
unidentified		 Oligo Array in situ oligonucleotide, Agilent-031544 Custom Plasmodium berghei str. ANKA array [PBANKA1], Arrays of this design have barcodes that begin with 16031544 or 2531544. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
15 GPL11486 NIAID Cnda -- Agilent Cryptococcus neoformans var. grubii H99 44K Oligo Microarray 44,886 National Institute of Allergy and Infectious Diseases 2011-01-14 Agilent Technologies Homo sapiens,Mus musculus,Cryptococcus neoformans var. grubii H99
Homo sapiens,Mus musculus,Cryptococcus neoformans var. grubii H99		 Oligo Array in situ oligonucleotide, NIAID Cnda -- Agilent Cryptococcus neoformans var. grubii H99 44K Oligo Microarray, Cryptococcus neoformans var grubii H99 transcript sequences were downloaded from the BROAD Institute website for this custom array. Hybridization probe sequences(60-mer) were selected using e-Array software (Agilent): two for each of the 6,969 transcripts, one of them strongly 3-prime biased (best probe methodology) the other less so (best distribution methodology). The 13,938 unique probes were arrayed in 3 replicate, randomized, locations on the Agilent Sure-Print microarray slide, 4x44K format. Additional control probes were included as well. Agilent designID: 025949
16 GPL7641 Long oligo 44K tracking array 44,290 University of Toronto 2008-11-16 Agilent Technologies Saccharomyces cerevisiae,Homo sapiens,Mus musculus,synthetic construct
Saccharomyces cerevisiae,Homo sapiens,Mus musculus,synthetic construct		 Oligo Array in situ oligonucleotide, Long oligo 44K tracking array,
17 GPL6762 Print_1046 42,624 Whitehead Institute for Biomedical Research 2008-04-22 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus
Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus		 cDNA Array spotted DNA/cDNA, Print_1046,
18 GPL6764 Print_1256 42,624 Whitehead Institute for Biomedical Research 2008-04-22 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus
Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus		 cDNA Array spotted DNA/cDNA, Print_1256,
19 GPL4220 UTTH_Mouse/P.bergheiANKA_44K_v1.0 42,034 University of Toronto 2006-08-25 Agilent Technologies Plasmodium berghei,Mus musculus
Plasmodium berghei,Mus musculus		 Oligo Array in situ oligonucleotide, UTTH_Mouse/P.bergheiANKA_44K_v1.0,
20 GPL6763 Print_1110 41,088 Whitehead Institute for Biomedical Research 2008-04-22 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus
Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus		 cDNA Array spotted DNA/cDNA, Print_1110,
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