Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(76)
  Primates
(0)
  Rodents
(51)
  Mammals
(15)
  Vertebrates
(15)
  Invertebrates
(45)
  Plants
(48)
  Bacteria
(43)
  Viruses
(1)
  Phages
(0)
  Unclassified
(14)
  All
(314)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(2)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(9)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(3)
  Other
(0)
  All
(14)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11243 Agilent-020623 Dinoroseobacter shibae DFL 12 15k Oligo Microarray (Feature Number version) 15,744 Helmholtz-Centre for Infection Research 2010-11-23 Agilent Technologies unidentified
unidentified
Oligo Array in situ oligonucleotide, Agilent-020623 Dinoroseobacter shibae DFL 12 15k Oligo Microarray (Feature Number version), Custom array.
2 GPL11330 Agilent custom Leishmania microarray v2 9,709 Université Laval 2010-12-17 Agilent
Oligo Array in situ oligonucleotide, Agilent custom Leishmania microarray v2, Multispecies Leishmania microarray
3 GPL11181 Exiqon miRCURY LNA microRNA Array 5th generation 9,008 MD Anderson Cancer Center 2010-11-08 Exiqon A/S Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpes
Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpes
Oligo Array spotted oligonucleotide, Exiqon miRCURY LNA microRNA Array 5th generation, ProductNumber = 208300-A, 208301-A, 208302-A miRBase 15.0
4 GPL11089 CapitalBio miRNA microarray V4.0 4,800 Nanjing University 2010-10-22 CapitalBio Corp. Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array in situ oligonucleotide, CapitalBio miRNA microarray V4.0,
5 GPL11362 CapitalBio mammal microRNA V4.0 4,800 Fudan University 2010-12-28 CapitalBio Corp Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, CapitalBio mammal microRNA V4.0,
6 GPL11094 [GLYCOv2a520086F] Custom Affymetrix Glyco v2 GeneChip 4,682 The Scripps Research Institute 2010-10-22 Affymetrix Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
GeneChip in situ oligonucleotide, [GLYCOv2a520086F] Custom Affymetrix Glyco v2 GeneChip, The Glyco v2 array was designed in 2003 and consists of probesets targeting genes coding for glycosyl transferases, carbohydrate binding proteins, glycan degradation enzymes, nucleotide sugar transporters, mucins, adhesion molecules, chemokines, cytokines, growth factors and their receptors, interleukins and their receptors and proteoglycans. In addition, a set of "housekeeping" and control genes are included on the array. The array contains probe set for both mouse and human gene sequences and can be use to analyze RNA from both species. Most of the human and mouse probe sets on the Glyco v2 array were taken directly from the v1 array (based on commercial U133A,B human array) with some probesets designed by Affymetrix from accessions for genes not well represented by the U133A,B. Additional carbohydrate related genes were added to the v2 array relative to the v1 array. In most cases, probesets consist of 11 probe pairs designed using the Perfect Match/Mismatch approach developed by Affymetrix. Immediately prior to our deadline for submittal of the v2 array design, Affymetrix introduced format changes to their custom array product line that substantially increased the available space on the v2 array. To address we represented most probe sets in triplicate or duplicate on the array. For example, the probe set for thrombomodulin (THBD) appears as: 203887 _Copy1_at, 203887 _Copy2_at, 203887 _Copy3_at where each copy represents an identical and independent set of probe pairs targeting the thrombomodulin transcript.
7 GPL11277 TFRC IL1403-c2 2.5K v1.0 2,294 Teagasc Food Research Centre 2010-12-03 Ocimum Biosolutions Lactococcus phage c2,Lactococcus lactis subsp. lactis Il1403
Lactococcus phage c2,Lactococcus lactis subsp. lactis Il1403
Oligo Array spotted oligonucleotide, TFRC IL1403-c2 2.5K v1.0, Custom-made, contains the whole genome sequences of L. lactis IL1403 (2,310 genes) and bacteriophage c2 (39 genes). 50-mer oligonucleotide probes for each gene spotted in duplicate. Control elements on each array include negative-control probes from unrelated Escherichia coli and Arabidopsis thaliana genes. Oligonucleotide probe design and microarray production were carried out by Ocimum Biosolutions Ltd. (Hyderabad, India).
8 GPL11338 Exiqon miRCURY LNA microRNA Array, v.8.0 - all organisms (miRBase 14.0) 2,240 MRC Cancer Cell Unit 2010-12-20 Exiqon A/S Homo sapiens,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Lymphocryptovirus,Rhadinovirus,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Merkel cell polyomavirus
Homo sapiens,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Lymphocryptovirus,Rhadinovirus,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Merkel cell polyomavirus
Oligo Array spotted oligonucleotide, Exiqon miRCURY LNA microRNA Array, v.8.0 - all organisms (miRBase 14.0), miRNA annotation based on Sanger miRBase 14.0. LotNumberRange: 1008-1012
9 GPL11241 miRCURY LNA microRNA Array, 5th generation - hsa, mmu & rno 2,027 Menzies Research Institute 2010-11-23 Exiqon A/S Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, miRCURY LNA microRNA Array, 5th generation - hsa, mmu & rno, Product no: 208300-A miRBase version 15.0 Platform data table based on file: gal_208300-A,208301-A,208302-A_lot33013-33013_hsa,mmu,rno-and-related-vira_from_mb150,miRPlus.gal
10 GPL11093 [scrGLYCO-v1F] Custom Affymetrix Glyco v1 GeneChip 1,814 The Scripps Research Institute 2010-10-22 Affymetrix Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
GeneChip in situ oligonucleotide, [scrGLYCO-v1F] Custom Affymetrix Glyco v1 GeneChip, The Glyco v1 array was designed in 2001 and consists of 3' probesets targeting genes coding for glycosyl transferases, carbohydrate binding proteins, glycan degradation enzymes, nucleotide sugar transporters, mucins, adhesion molecules, chemokines, cytokines, growth factors and their receptors, interleukins and their receptors and proteoglycans. In addition, a set of "housekeeping" and control genes are included on the array. The array contains probe set for both mouse and human gene sequences and can be use to analyze RNA from either species. Most of the human probe sets on the Glyco v1 array were taken directly from the commercial U133A,B human array although a substantial number of the probesets were custom designed by Affymetrix from accessions for genes not well represented by the U133A,B. At the time, the Mouse 430 array had not yet been released by Affymetrix so mouse probesets were all custom designed by Affymetrix for this array using the U133A,B design algorithms. In most cases, probesets consist of 11 probe pairs designed using the Perfect Match/Mismatch approach developed by Affymetrix.
11 GPL11306 WJC hsa mmu miRNA v7.1 01 (miRNA ID) 459 IMPPC 2010-12-10 Wilhelm Johannsen Center for Functional Genome Research, University of Copenhagen Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
Oligo Array spotted oligonucleotide, WJC hsa mmu miRNA v7.1 01 (miRNA ID),
12 GPL11099 454 GS (Caenorhabditis elegans; Escherichia coli) 0 2010-10-22 Escherichia coli,Caenorhabditis elegans
Escherichia coli,Caenorhabditis elegans
HT Sequencing high-throughput sequencing, 454 GS (Caenorhabditis elegans; Escherichia coli),
13 GPL11112 Illumina Genome Analyzer (Capsicum annuum; Meloidogyne incognita) 0 2010-10-25 Capsicum annuum,Meloidogyne incognita
Capsicum annuum,Meloidogyne incognita
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Capsicum annuum; Meloidogyne incognita),
14 GPL11212 454 GS FLX (unidentified) 0 2010-11-15 unidentified
unidentified
HT Sequencing high-throughput sequencing, 454 GS FLX (unidentified),