Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(86)
  Primates
(3)
  Rodents
(61)
  Mammals
(19)
  Vertebrates
(14)
  Invertebrates
(35)
  Plants
(60)
  Bacteria
(65)
  Viruses
(10)
  Phages
(0)
  Unclassified
(17)
  All
(374)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(1)
  Tiling Array
(0)
  cDNA Array
(1)
  Oligo Array
(12)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(1)
  HT-Seq
(1)
  Other
(1)
  All
(17)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11674 UW/NimbleGen_humangorilla_custom_dupsdels 2,097,383 University of Washington 2011-01-31 Nimblegen Gorilla gorilla,Homo sapiens
Gorilla gorilla,Homo sapiens
Oligo Array in situ oligonucleotide, UW/NimbleGen_humangorilla_custom_dupsdels,
2 GPL11486 NIAID Cnda -- Agilent Cryptococcus neoformans var. grubii H99 44K Oligo Microarray 44,886 National Institute of Allergy and Infectious Diseases 2011-01-14 Agilent Technologies Homo sapiens,Mus musculus,Cryptococcus neoformans var. grubii H99
Homo sapiens,Mus musculus,Cryptococcus neoformans var. grubii H99
Oligo Array in situ oligonucleotide, NIAID Cnda -- Agilent Cryptococcus neoformans var. grubii H99 44K Oligo Microarray, Cryptococcus neoformans var grubii H99 transcript sequences were downloaded from the BROAD Institute website for this custom array. Hybridization probe sequences(60-mer) were selected using e-Array software (Agilent): two for each of the 6,969 transcripts, one of them strongly 3-prime biased (best probe methodology) the other less so (best distribution methodology). The 13,938 unique probes were arrayed in 3 replicate, randomized, locations on the Agilent Sure-Print microarray slide, 4x44K format. Additional control probes were included as well. Agilent designID: 025949
3 GPL11412 Prochlorococcus microarray 11K 10,793 MIT 2011-01-10 Affymetrix Prochlorococcus marinus subsp. pastoris str. CCMP1986,Prochlorococcus marinus str. MIT 9313,Prochlorococcus phage P-SSM4,Prochlorococcus phage P-SSP7
Prochlorococcus marinus subsp. pastoris str. CCMP1986,Prochlorococcus marinus str. MIT 9313,Prochlorococcus phage P-SSM4,Prochlorococcus phage P-SSP7
GeneChip in situ oligonucleotide, Prochlorococcus microarray 11K,
4 GPL13324 University of Sydney CombiMatrix 12K PANarray 10,251 University of Sydney 2011-03-24 Now manufactured by CustomArray Inc, WA, USA Pseudomonas aeruginosa UCBPP-PA14,Pseudomonas aeruginosa PAO1,Pseudomonas aeruginosa 2192,Pseudomonas aeruginosa C3719,Pseudomonas aeruginosa PA7,Pseudomonas aeruginosa PACS2,Pseudomonas aeruginosa LESB58,unidentified
Pseudomonas aeruginosa UCBPP-PA14,Pseudomonas aeruginosa PAO1,Pseudomonas aeruginosa 2192,Pseudomonas aeruginosa C3719,Pseudomonas aeruginosa PA7,Pseudomonas aeruginosa PACS2,Pseudomonas aeruginosa LESB58,unidentified
cDNA Array spotted DNA/cDNA, University of Sydney CombiMatrix 12K PANarray, Contains genes from eight Pseudomonas aeruginosa strain genomes: AES-1, PAO1, UCBPP-PA14, PA7, c3719, PA2192, PACS2 and LESB58 (Liverpool Epidemic Strain).
5 GPL13273 EXIQON miRCURYâ„¢ V8.1 LNA array 6,720 Edinburgh University 2011-03-11 EXIQON Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpesvirus 8
Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpesvirus 8
Oligo Array spotted oligonucleotide, EXIQON miRCURYâ„¢ V8.1 LNA array, annotated to mirbase 13 Spotted locked nucleic acid (LNA)
6 GPL13162 UCSF Gladstone Mouse/Human miRNA 3.7k array 4,587 UCSF 2011-02-11 Gladstone genomics core Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
Oligo Array spotted oligonucleotide, UCSF Gladstone Mouse/Human miRNA 3.7k array, UCSF Gladstone-mouse and human mIRNA-3756 features-GenePix ArrayList V1.0 LNA array spotted oligo
7 GPL13189 Invitrogen NCode Mammalian miRNA Microarray 4K Probe Set Version 1.0 (Cat. # MIRMPS-01) 4,096 UCSD 2011-02-17 Invitrogen Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Homo sapiens,Mus musculus,Rattus norvegicus
Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, Invitrogen NCode Mammalian miRNA Microarray 4K Probe Set Version 1.0 (Cat. # MIRMPS-01),
8 GPL13345 NCode multi-species miRNA microarray V2 3,387 NCBI/NLM/NIH 2011-03-29 Invitrogen Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Homo sapiens,Mus musculus,Rattus norvegicus
Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, NCode multi-species miRNA microarray V2,
9 GPL11434 miRCURY LNA microRNA Array, 6th generation - hsa, mmu & rno 2,681 Exiqon A/S 2011-01-12 Exiqon A/S Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpes
Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpes
Oligo Array spotted oligonucleotide, miRCURY LNA microRNA Array, 6th generation - hsa, mmu & rno, Array covering Sanger miRBase 16.0 and Exiqon miRPlus mature miRNAs. The platform information provided is from the time of the design. Names, accession numbers and sequences are listed for mature miRNAs in miRBase 16.0. Some probes may target multiple miRNAs, in which case multiple miRNA names, accession numbers and sequences are listed separated by '/'
10 GPL13137 CombiMatrix_custom design 7327 2,201 Oregon Health and Science University 2011-02-08 CombiMatrix Corporation, CustomArray Inc. Bradyrhizobium,Rhizobium,Skeletonema,Thalassiosira,Pseudo-nitzschia,Mesorhizobium,Roseovarius,uncultured marine crenarchaeote,uncultured SAR11 cluster alpha proteobacterium
Bradyrhizobium,Rhizobium,Skeletonema,Thalassiosira,Pseudo-nitzschia,Mesorhizobium,Roseovarius,uncultured marine crenarchaeote,uncultured SAR11 cluster alpha proteobacterium
Oligo Array in situ oligonucleotide, CombiMatrix_custom design 7327,
11 GPL11432 miRCURY LNA microRNA Array, 5th generation - hsa, mmu & rno 2,029 Exiqon A/S 2011-01-12 Exiqon A/S Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpesvirus 8,Merkel cell
Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpesvirus 8,Merkel cell
Oligo Array spotted oligonucleotide, miRCURY LNA microRNA Array, 5th generation - hsa, mmu & rno, Array covering Sanger miRBase 14.0 and Exiqon miRPlus mature miRNAs. The platform information provided is from the time of the design. Names, accession numbers and sequences are listed for mature miRNAs in miRBase 14.0. Some probes may target multiple miRNAs, in which case multiple miRNA names, accession numbers and sequences are listed separated by '/'
12 GPL11442 Capitalbio mammal microRNA V2.0 1,764 Karolinska Institutet 2011-01-12 Capitalbio Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, Capitalbio mammal microRNA V2.0,
13 GPL11490 Arthropod Pathogen Microarray 1.5K v 1.0 1,536 UCSF 2011-01-16 DeRisi Lab - UCSF Fungi,unidentified entomopoxvirus,unidentified baculovirus,Iridovirus,Densovirus,Cypovirus,Birnaviridae,Luteovirus,Black beetle virus,unclassified viruses,Ascovirus,Betabaculovirus,Gammabaculovirus
Fungi,unidentified entomopoxvirus,unidentified baculovirus,Iridovirus,Densovirus,Cypovirus,Birnaviridae,Luteovirus,Black beetle virus,unclassified viruses,Ascovirus,Betabaculovirus,Gammabaculovirus
Oligo Array spotted oligonucleotide, Arthropod Pathogen Microarray 1.5K v 1.0,
14 GPL11673 LC Mouse_Human_12.0_090114 miRNA Array (MRA-2001) 1,201 Beijing Institute of Biotechnology 2011-01-30 LC Sciences Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
Oligo Array spotted oligonucleotide, LC Mouse_Human_12.0_090114 miRNA Array (MRA-2001), Including: 1) All mouse mature miRNAs listed in miRBase version 12.0 2) Human mature miRNAs that are different from mouse miRNAs.
15 GPL11652 AbC_ELTE_human_432_v1 432 Eötvös Loránd University 2011-01-26 Eotvos Lorand University, Budapest, Hungary Homo sapiens,Sus scrofa,Bos taurus,Capra hircus,Oryctolagus cuniculus
Homo sapiens,Sus scrofa domestica,Bos taurus,Capra hircus,Oryctolagus cuniculus
Other spotted peptide or protein, AbC_ELTE_human_432_v1,
16 GPL13296 TaqMan® Array Human/Mouse MicroRNA Panel (custom early version) 150 Stanford University 2011-03-18 Applied Biosystems Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
RT-PCR RT-PCR, TaqMan® Array Human/Mouse MicroRNA Panel (custom early version),
17 GPL13297 Illumina Genome Analyzer II (Ptomaphagus hirtus) 0 2011-03-18 unidentified
unidentified
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Ptomaphagus hirtus),