Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(83)		   Primates
(1)		   Rodents
(56)		   Mammals
(14)		   Vertebrates
(16)		   Invertebrates
(31)		   Plants
(83)		   Bacteria
(54)		   Viruses
(2)		   Phages
(1)		   Unclassified
(24)		   All
(368)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(0)		   cDNA Array
(1)		   Oligo Array
(12)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(10)		   Other
(1)		   All
(24)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL14978 NimbleGen Rana muscosa/sierrae 12-plex Oligo Custom Expression Array [100211_RM_MS_EXP] 29,258 University of Idaho 2011-12-07 NimbleGen Rana muscosa,unidentified
Rana muscosa,unidentified		 Oligo Array in situ oligonucleotide, NimbleGen Rana muscosa/sierrae 12-plex Oligo Custom Expression Array [100211_RM_MS_EXP], The microarray contained 127,867 60-mer probes representing a possible 29,259 expressed transcripts (probe sets). Probe sets were defined as all probes that mapped to a single transcript, which in turn mapped to a single gene. Probe sequences within the ndf file. SLIDE_LAYOUT_NAME: NimbleChip_HX12 DESIGN_NAME: 100211_RM_MS_EXP DESIGN_ID: 11375
2 GPL14894 SMD Print_1670 CAT07L3 (Saccharomyces cerevisiae and Methanococcus jannaschii) 20,352 Stanford Microarray Database (SMD) 2011-11-16 Stanford Functional Genomics Facility, Stanford School of Medicine Methanocaldococcus jannaschii,Saccharomyces cerevisiae
Methanocaldococcus jannaschii,Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, SMD Print_1670 CAT07L3 (Saccharomyces cerevisiae and Methanococcus jannaschii),
3 GPL14692 Agilent_028085 Ketogulonigenium vulgare custom microarray [Feature Number version] 15,744 Arraystar Inc. 2011-10-10 Agilent Technologies unidentified
unidentified		 Oligo Array in situ oligonucleotide, Agilent_028085 Ketogulonigenium vulgare custom microarray [Feature Number version], The Ketogulonigenium vulgarum WSH-001 custom Microarray is a broad view that represents well-known and predicted Ketogulonigenium vulgarum WSH-001 genes and transcripts. Coupled with NCBI’s gene prediction processes and Agilent's probe selection, this design delivers increased data quality and less gene coverage redundancy. Design ID : 028085 ***A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL14693.
4 GPL15030 Agilent Human, KSHV, and EBV 44K AMADID #027774 14,601 University of Pittsburgh 2011-12-19 Agilent Technologies Homo sapiens,Human herpesvirus 4,Human herpesvirus 8
Homo sapiens,Human herpesvirus 4,Human herpesvirus 8		 Oligo Array in situ oligonucleotide, Agilent Human, KSHV, and EBV 44K AMADID #027774,
5 GPL14957 Exiqon miRCURY LNA microRNA Array 5th generation (DesignedFor miRBase 14.0, CurrentVersion miRBase 16.0) 9,360 NCBI/NLM/NIH 2011-12-05 Exiqon A/S Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpes
Homo sapiens,Mus musculus,Rattus norvegicus,Human herpesvirus 1,Human herpesvirus 2,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpes		 Oligo Array spotted oligonucleotide, Exiqon miRCURY LNA microRNA Array 5th generation (DesignedFor miRBase 14.0, CurrentVersion miRBase 16.0),
6 GPL14819 LC Sciences_Vertebrate_microRNA_Version17 (MRA-1033) 5,619 National Center for Toxicological Research 2011-11-01 LC Sciences Petromyzon marinus,Danio rerio,Oryzias latipes,Xenopus laevis,Xenopus (Silurana) tropicalis,Gallus gallus,Ornithorhynchus anatinus,Ateles geoffroyi,Macaca mulatta,Macaca nemestrina,Symphalangus syndactylus,Pan paniscus,Pan troglodytes,Pongo pygmaeus,Homo
Petromyzon marinus,Danio rerio,Oryzias latipes,Xenopus laevis,Xenopus tropicalis,Gallus gallus,Ornithorhynchus anatinus,Ateles geoffroyi,Macaca mulatta,Macaca nemestrina,Symphalangus syndactylus,Pan paniscus,Pan troglodytes,Pongo pygmaeus,Homo 		Oligo Array in situ oligonucleotide, LC Sciences_Vertebrate_microRNA_Version17 (MRA-1033), Platform table annotations based on miRBase release version 17 catalog number : MRA-1033 http://www.lcsciences.com/applications/transcriptomics/mirna-profiling/mirna/mirna-available-arrays/vertebrates-array-content/
7 GPL15062 LC Human-Mouse-Rat miRNA Array 3,968 Northwestern University 2011-12-27 LC Sciences Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 Oligo Array in situ oligonucleotide, LC Human-Mouse-Rat miRNA Array,
8 GPL14693 Agilent_028085 Ketogulonigenium vulgare custom microarray [Probe Name version] 3,060 Arraystar Inc. 2011-10-10 Agilent Technologies unidentified
unidentified		 Oligo Array in situ oligonucleotide, Agilent_028085 Ketogulonigenium vulgare custom microarray [Probe Name version], DesignID : 028085 *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL14692
9 GPL15016 Agilent-025771 UCSF Multi-species custom array miRNA-v3.5-8x15k 2,714 UCSF Sandler Center Functional Genomics Core Facility 2011-12-15 Agilent Technologies Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Gallus gallus,Homo sapiens,Mus musculus,Rattus norvegicus
Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Gallus gallus,Homo sapiens,Mus musculus,Rattus norvegicus		 Oligo Array in situ oligonucleotide, Agilent-025771 UCSF Multi-species custom array miRNA-v3.5-8x15k, miRNA microarray probe design, v3.5 (10/15/09) Mirbase 14, hsa, mmu, dre, gga, rno, dme, cel Total unique probe sequences: 2405(miR)+14(siRNA)+24(snRNA)+16(snoRNA)+3(tRNA)+30(spike-in)+30(mRNA)+192 = 2714 For the 2405 miRNA probes, 6 replicates were generated For the 117 control probes, 5 replicates were generated For the 192 mismatch probes, 1 replicate Total UCSF probes: 15207 Agilent Controls: 536 Total probes on array: 15743 + 1 empty = 15744 NOTE: Platform ID column lists probe IDs from array design v3.5. Core Annotation file (see design_cross_ref-5.txt below) shows relationships among the probeIDs in array designs v3.4 (Agilent-023723), v3.5 (Agilent-025771), and v3.6 (Agilent-031052). Arrays of this design have barcodes that begin with 16025771 or 2525771. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
10 GPL15042 CNIO Genomics Unit Custom Multi-Species miRNA Microarray 2,592 CNIO (Spanish National Cancer Center) 2011-12-19 Genomics Unit. CNIO (Spanish National Cancer Research Centre). Madrid. Spain. Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Homo sapiens,Mus musculus,Rattus norvegicus
Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Homo sapiens,Mus musculus,Rattus norvegicus		 Oligo Array spotted oligonucleotide, CNIO Genomics Unit Custom Multi-Species miRNA Microarray,
11 GPL14829 Exiqon miRCURY LNA microRNA array v.11.0 Gene ID Version - hsa, mmu & rno 1,976 University of Pennsylvania School of Medicine 2011-11-02 Exiqon A/S Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 Oligo Array spotted oligonucleotide, Exiqon miRCURY LNA microRNA array v.11.0 Gene ID Version - hsa, mmu & rno, Array represents miRBase version 11.0 with additional features. ArrayContents_CurrentNameColumnCoverage: Homo sapiens and related vira:93.31%, Mus musculus and related vira: 88.6%, Rattus norvegicus:98.85%
12 GPL14769 Human and EBV 0.95K microRNA array 951 Cancer Center, Sun Yat-Sen University, Guangzhou, China 2011-10-20 State Key Laboratory of Oncology in Southern China, Cancer Center, Sun Yat-Sen University, China Homo sapiens,Human herpesvirus 4
Homo sapiens,Human herpesvirus 4		 Oligo Array spotted oligonucleotide, Human and EBV 0.95K microRNA array,
13 GPL14672 miRNAChip_MS_V1 247 University of Aveiro 2011-10-05 National Facility for DNA Microarrays - University of Aveiro Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Gallus gallus,Homo sapiens,Mus musculus,Rattus norvegicus,Takifugu rubripes
Caenorhabditis elegans,Drosophila melanogaster,Danio rerio,Gallus gallus,Homo sapiens,Mus musculus,Rattus norvegicus,Takifugu rubripes		 Oligo Array spotted oligonucleotide, miRNAChip_MS_V1,
14 GPL14945 Utz lab histone protein and peptide array 87 Stanford University 2011-12-01 Laboratory of Paul J. Utz Gallus gallus,Homo sapiens,Bos taurus
Gallus gallus,Homo sapiens,Bos taurus		 Other spotted peptide or protein, Utz lab histone protein and peptide array,
15 GPL14662 Illumina Genome Analyzer II (D.melanogaster) 0 2011-10-03 unidentified
unidentified		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (D.melanogaster),
16 GPL14706 Illumina Genome Analyzer II (Candida parapsilosis CLIB226) 0 2011-10-10 unidentified
unidentified		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Candida parapsilosis CLIB226),
17 GPL14707 Illumina Genome Analyzer II (Candida parapsilosis CLIB227) 0 2011-10-10 unidentified
unidentified		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Candida parapsilosis CLIB227),
18 GPL15003 Illumina Genome Analyzer IIx (lambda virus) 0 2011-12-13 unidentified
unidentified		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (lambda virus),
19 GPL15026 454 GS (Cymbidium ringspot virus; Nicotiana benthamiana) 0 2011-12-19 Nicotiana benthamiana,Cymbidium ringspot virus
Nicotiana benthamiana,Cymbidium ringspot virus		 HT Sequencing high-throughput sequencing, 454 GS (Cymbidium ringspot virus; Nicotiana benthamiana),
20 GPL15027 Illumina Genome Analyzer (Naumovozyma castellii) 0 2011-12-19 unidentified
unidentified		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Naumovozyma castellii),
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