Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(7)		   cDNA Array
(61)		   Oligo Array
(104)		   Bead Array
(4)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(57)		   Other
(1)		   All
(249)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to zinc and cadmium exposure (GSE45693) [HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 2683) (GPL16949) CIRAD 2013-04-01 Mesorhizobium metallidurans,unidentified
Mesorhizobium metallidurans,unidentified		 3
(0 x 3) 		3 by_platform
by_series
2 Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to zinc and cadmium exposure (GSE45693) [HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 4661) (GPL16950) CIRAD 2013-04-01 Mesorhizobium metallidurans,unidentified
Mesorhizobium metallidurans,unidentified		 3
(0 x 3) 		3 by_platform
by_series
3 Transcriptome-based characterization of the interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat co-cultures (GSE45623) [Oligo Array] Agilent TIFN Lactobacillus bulgaricus arrays, TB1_8, Version 1 (GPL16855) Arla Foods 2013-03-29 unidentified,Lactobacillus delbrueckii subsp. bulgaricus
unidentified,Lactobacillus delbrueckii subsp. bulgaricus		 29,532
(7,383 x 4) 		4 by_platform
by_series
4 A unique herpesviral transcriptional program in KSHV-infected lymphatic endothelial cells leads to mTORC1 activation and rapamycin sensitivity (GSE45600) [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) Novartis Institutes for BioMedical Research 2013-03-28 unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 165,720
(13,810 x 12) 		4 8 by_platform
by_series
5 Mock and stably infected rKSHV.219 cells (LEC, BEC, HUVEC, and HAEC) [Expt2] (GSE45591) [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) Novartis Institutes for BioMedical Research 2013-03-28 unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 110,480
(13,810 x 8) 		4 4 by_platform
by_series
6 Mock and stably infected rKSHV.219 cells (LEC and BEC) [Expt1] (GSE45590) [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) Novartis Institutes for BioMedical Research 2013-03-28 unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 55,240
(13,810 x 4) 		4 by_platform
by_series
7 Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing (GSE45178) [HT Sequencing] PacBio RS (Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992) (GPL16793) FDA/CFSAN 2013-03-14 unidentified
unidentified		 1
(0 x 1) 		1 by_platform
by_series
8 Genomic and Transcriptomic Analysis of NaCl-Tolerant Staphylococcus sp. OJ82 from Fermented Seafood (GSE42992) [HT Sequencing] Illumina Genome Analyzer IIx (Staphylococcus sp. OJ82) (GPL16392) Korea university 2012-12-18 Staphylococcus,unidentified
Staphylococcus,unidentified		 2
(0 x 2) 		2 by_platform
by_series
9 Comparative transcriptional analysis of Desulfovibrio G20 grown under syntrophic and respiratory condtions (GSE42571) [Oligo Array] NimbleGen Custom Desulfovibrio alaskensis str. G20 4-plex [080626_Ddes_G20_EXP] (GPL16334) Lawrence Berkeley Lab 2012-11-28 Desulfovibrio,unidentified
Desulfovibrio,unidentified		 29,184
(3,648 x 8) 		8 by_platform
by_series
10 Ammonia oxidizing archaeal community composition in Gulf of Mexico sediments investigated with an amoA functional gene microarray (GSE42286) [Oligo Array] Princeton Microarray Facility AOA Archetype Microarray BC014 (GPL16281) Boston University 2012-11-14 synthetic construct,uncultured ammonia-oxidizing archaeon
synthetic construct,uncultured ammonia-oxidizing archaeon		 465
(31 x 15) 		15 by_platform
by_series
11 Depth Distribution of Ammonia Oxidation Rates and Ammonia-Oxidizer Community Composition in the Sargasso Sea (GSE42287) [Oligo Array] Princeton Microarray Facility AOA Archetype Microarray BC015 (GPL16282) Boston University 2012-11-14 synthetic construct,uncultured ammonia-oxidizing archaeon
synthetic construct,uncultured ammonia-oxidizing archaeon		 248
(31 x 8) 		8 by_platform
by_series
12 Gene expression profiling of a nisin-sensitive Listeria monocytogenes Scott A ctsR deletion mutant (GSE41891) [Oligo Array] Listeria monocytogenes strain F2365 5.6K (GPL6489) ERRS-ARS-USDA 2012-10-28 Listeria monocytogenes,unidentified
Listeria monocytogenes,unidentified		 22,552
(5,638 x 4) 		4 by_platform
by_series
13 Regulation of Puf2 Expression is Critical for Plasmodium Sporozoite Development and Maintenance of Sporozoite Transmissibility (GSE41873) [HT Sequencing] Illumina Genome Analyzer (Plasmodium yoelii yoelii 17XNL) (GPL16222) Seattle BioMed 2012-10-26 Plasmodium yoelii,unidentified
Plasmodium yoelii,unidentified		 2
(0 x 2) 		2 by_platform
by_series
14 Linkage of genomic biomarkers to whole organism endpoints in a Toxicity Identification Evaluation (TIE) (GSE41463) [Oligo Array] Agilent-020996 USEPA Ampelisca abdita 8 x15k 60mer v1.0 (G2509F) (GPL16161) US Environmental Protection Agency 2012-10-10 Ampelisca,unidentified
Ampelisca,unidentified		 1,110,001
(7,351 x 151) 		3 148 by_platform
by_series
15 The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111 (GSE41244) [HT Sequencing] Illumina HiSeq 2000 (Burkholderia cenocepacia H111) (GPL16128) university of zürich 2012-10-01 Burkholderia,unidentified
Burkholderia,unidentified		 3
(0 x 3) 		3 by_platform
by_series
16 Characteristics of Cross-Hybridization and Cross-Alignment in Pseudo-Xenograft samples by RNA-Seq and Microarrays [RNA-Seq] (GSE40890) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens; Mus musculus) (GPL16061) University of Miami 2012-09-14 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 10
(0 x 10) 		10 by_platform
by_series
17 Characteristics of Cross-Hybridization and Cross-Alignment in Pseudo-Xenograft samples by RNA-Seq and Microarrays (GSE40892) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens; Mus musculus) (GPL16061) University of Miami 2012-09-14 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 10
(0 x 10) 		10 by_platform
by_series
18 Microbial communities in the gut of the beetle Odontotaenius disjunctus (GSE40067) [GeneChip] [PhyloChip] Affymetrix G2 PhyloChip (GPL15537) University of California, Berkeley 2012-08-13 unidentified,metagenomes
unidentified,metagenomes		 139,856
(8,741 x 16) 		4 12 by_platform
by_series
19 Array-Painting with Hoolock sorted chromosomes (GSE40024) [Tiling Array] Human 32k tiling BAC array (GPL15909) Oregon Health & Science University 2012-08-09 Bunopithecus hoolock leuconedys,Homo sapiens
Bunopithecus hoolock leuconedys,Homo sapiens		 168,400
(33,680 x 5) 		5 by_platform
by_series
20 Exposure of microaerobic Campylobacter jejuni to diffusible molecules from chicken caecal contents (GSE39917) [Oligo Array] MWG Campylobacter jejuni Array (GPL532) University of Sheffield 2012-08-06 Campylobacter jejuni subsp. jejuni,unidentified
Campylobacter jejuni subsp. jejuni,unidentified		 8,640
(1,728 x 5) 		5 by_platform
by_series
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