Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(42)
  Oligo Array
(267)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(542)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9757 [stSmel_Mtra] SRL_SU Sinorhizobium meliloti/Medicago truncatula dual-genome SymbiosisChip, Affymetrix part number 510699 22,973 Stanford University 2009-12-07 Affymetrix Sinorhizobium meliloti,Medicago truncatula
Sinorhizobium meliloti,Medicago truncatula
GeneChip in situ oligonucleotide, [stSmel_Mtra] SRL_SU Sinorhizobium meliloti/Medicago truncatula dual-genome SymbiosisChip, Affymetrix part number 510699, The dual genome Affymetrix SymbiosisChip contains probe sets for S. meliloti ORFs annotated in 2001, intergenic regions over 150 bp, and ~10,000 probe sets corresponding to expressed sequence tags of the plant host, Medicago truncatula.
2 GPL11093 [scrGLYCO-v1F] Custom Affymetrix Glyco v1 GeneChip 1,814 The Scripps Research Institute 2010-10-22 Affymetrix Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
GeneChip in situ oligonucleotide, [scrGLYCO-v1F] Custom Affymetrix Glyco v1 GeneChip, The Glyco v1 array was designed in 2001 and consists of 3' probesets targeting genes coding for glycosyl transferases, carbohydrate binding proteins, glycan degradation enzymes, nucleotide sugar transporters, mucins, adhesion molecules, chemokines, cytokines, growth factors and their receptors, interleukins and their receptors and proteoglycans. In addition, a set of "housekeeping" and control genes are included on the array. The array contains probe set for both mouse and human gene sequences and can be use to analyze RNA from either species. Most of the human probe sets on the Glyco v1 array were taken directly from the commercial U133A,B human array although a substantial number of the probesets were custom designed by Affymetrix from accessions for genes not well represented by the U133A,B. At the time, the Mouse 430 array had not yet been released by Affymetrix so mouse probesets were all custom designed by Affymetrix for this array using the U133A,B design algorithms. In most cases, probesets consist of 11 probe pairs designed using the Perfect Match/Mismatch approach developed by Affymetrix.
3 GPL16713 [miRChip1s520189F] Custom Affymetrix microRNA array 14,215 UCSF 2013-02-22 Affymetrix Populus trichocarpa,Oryza sativa,Caenorhabditis elegans,Homo sapiens,Mus musculus,Rattus norvegicus,synthetic construct
Populus trichocarpa,Oryza sativa,Caenorhabditis elegans,Homo sapiens,Mus musculus,Rattus norvegicus,synthetic construct
GeneChip in situ oligonucleotide, [miRChip1s520189F] Custom Affymetrix microRNA array, custom Affymetrix Genechip designed to miRNA probes derived from Sanger miRBase v9.2. This array contained a total of 14215 probes, of which 672 matched to 301 unique mouse miRNAs.
4 GPL4652 [Medicago] Affymetrix Medicago Genome Array 61,278 Affymetrix, Inc. 2006-12-08 Affymetrix Sinorhizobium meliloti,Medicago sativa,Medicago truncatula
Sinorhizobium meliloti,Medicago sativa,Medicago truncatula
GeneChip in situ oligonucleotide, [Medicago] Affymetrix Medicago Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip Medicago Genome Array is designed specifically to monitor gene expression in Medicago truncatula, Medicago sativa, and the symbiotic organism Sinorhizobium meliloti. The Medicago Genome Array is particularly useful for agriculture researchers studying legume genomics and symbiotic relationships between nitrogen fixing bacteria and plants. Sequence information for this array was selected from data sources including the TIGR M. truncatula gene index (The Institute for Genomic Research, January 2005), gene predictions from the International Medicago Genome Annotation Group (IMGAG), gene predictions from the S. meliloti genome, and M. sativa EST information made available by TIGR. The array contains over 61,200 probe sets: 32,167 M. truncatula EST/mRNA-based and chloroplast gene-based probe sets; 18,733 M. truncatula IMGAG and phase 2/3 BAC prediction-based probe sets; 1,896 M. sativa EST/mRNA-based probe sets; and 8,305 S. meliloti gene prediction-based probe sets.
5 GPL11094 [GLYCOv2a520086F] Custom Affymetrix Glyco v2 GeneChip 4,682 The Scripps Research Institute 2010-10-22 Affymetrix Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
GeneChip in situ oligonucleotide, [GLYCOv2a520086F] Custom Affymetrix Glyco v2 GeneChip, The Glyco v2 array was designed in 2003 and consists of probesets targeting genes coding for glycosyl transferases, carbohydrate binding proteins, glycan degradation enzymes, nucleotide sugar transporters, mucins, adhesion molecules, chemokines, cytokines, growth factors and their receptors, interleukins and their receptors and proteoglycans. In addition, a set of "housekeeping" and control genes are included on the array. The array contains probe set for both mouse and human gene sequences and can be use to analyze RNA from both species. Most of the human and mouse probe sets on the Glyco v2 array were taken directly from the v1 array (based on commercial U133A,B human array) with some probesets designed by Affymetrix from accessions for genes not well represented by the U133A,B. Additional carbohydrate related genes were added to the v2 array relative to the v1 array. In most cases, probesets consist of 11 probe pairs designed using the Perfect Match/Mismatch approach developed by Affymetrix. Immediately prior to our deadline for submittal of the v2 array design, Affymetrix introduced format changes to their custom array product line that substantially increased the available space on the v2 array. To address we represented most probe sets in triplicate or duplicate on the array. For example, the probe set for thrombomodulin (THBD) appears as: 203887 _Copy1_at, 203887 _Copy2_at, 203887 _Copy3_at where each copy represents an identical and independent set of probe pairs targeting the thrombomodulin transcript.
6 GPL10714 [Agilent-021439] University of Chicago-Dual Species (Homo sapiens and Mus musculus) 87K array 87,107 University of Chicago 2010-07-21 Agilent Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
Oligo Array in situ oligonucleotide, [Agilent-021439] University of Chicago-Dual Species (Homo sapiens and Mus musculus) 87K array,
7 GPL16690 Yale Lu Human/Mouse microRNA v2.0 636 Yale University 2013-02-18 Lu Lab Homo sapiens,Mus musculus,Human herpesvirus 4
Homo sapiens,Mus musculus,Human herpesvirus 4
Oligo Array spotted oligonucleotide, Yale Lu Human/Mouse microRNA v2.0, miRBase release version 19
8 GPL7436 Wurdinger/Krichevsky miRNA array IV 435 MGH 2008-10-07 Thomas Wurdinger and Anna K. Krichevsky Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
cDNA Array spotted DNA/cDNA, Wurdinger/Krichevsky miRNA array IV,
9 GPL11306 WJC hsa mmu miRNA v7.1 01 (miRNA ID) 459 IMPPC 2010-12-10 Wilhelm Johannsen Center for Functional Genome Research, University of Copenhagen Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
Oligo Array spotted oligonucleotide, WJC hsa mmu miRNA v7.1 01 (miRNA ID),
10 GPL6485 WJC hsa mmu miRNA v7.1 01 2,304 University of Copenhagen 2008-02-13 Wilhelm Johannsen Center for Functional Genome Research, University of Copenhagen Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
Oligo Array spotted oligonucleotide, WJC hsa mmu miRNA v7.1 01,
11 GPL10232 Washington University School of Medicine Microarray Core Brugia malayi microarray V.2 36,248 University Hospital Bonn 2010-03-19 Washington University School of Medicine Microarray Core Brugia malayi,Onchocerca volvulus,Wuchereria bancrofti,Wolbachia endosymbiont strain TRS of Brugia malayi
Brugia malayi,Onchocerca volvulus,Wuchereria bancrofti,Wolbachia endosymbiont strain TRS of Brugia malayi
Oligo Array spotted oligonucleotide, Washington University School of Medicine Microarray Core Brugia malayi microarray V.2,
12 GPL6429 Vanderbuilt University miRNA Bioarray 2,662 Vanderbilt University 2008-01-28 Ambion, Inc. Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, Vanderbuilt University miRNA Bioarray, Manufactured using GE Healthcare’s CodeLink (TM) 3-D Gel Matrix Technology Surface type: non-adsorptive Attachment: covalent The mirVana miRNA Bioarrays are an Ambion product that is manufactured by GE Healthcare and incorporates the CodeLink™ 3-D Gel Matrix slide surface. This aqueous environment elevates the probes away from the surface of the slide, allowing for maximum interaction between the probes and targets.
13 GPL11674 UW/NimbleGen_humangorilla_custom_dupsdels 2,097,383 University of Washington 2011-01-31 Nimblegen Gorilla gorilla,Homo sapiens
Gorilla gorilla,Homo sapiens
Oligo Array in situ oligonucleotide, UW/NimbleGen_humangorilla_custom_dupsdels,
14 GPL14164 UW-Madison_GLBRC_Fox_Currie Streptomyces sp. SirexAA-E (ActE) 72k v 1.0 6,500 University of Wisconsin Madison 2011-08-18 Roche NimbleGen unidentified
unidentified
Oligo Array in situ oligonucleotide, UW-Madison_GLBRC_Fox_Currie Streptomyces sp. SirexAA-E (ActE) 72k v 1.0, UW-Madison_GLBRC_Fox_Currie Streptomyces sp. SirexAA-E (ActE) 72k v 1.0 Carbon Source Induced Gene Expression
15 GPL9108 UW CombiMatrix Candidatus Accumulibacter phosphatis 12.5K 12,544 University of Wisconsin-Madison 2009-08-26 CombiMatrix uncultured bacterium,Candidatus Accumulibacter phosphatis
uncultured bacterium,Candidatus Accumulibacter phosphatis
Oligo Array in situ oligonucleotide, UW CombiMatrix Candidatus Accumulibacter phosphatis 12.5K,
16 GPL14638 Utz Lab Whole Protein Autoantigen Array V2.0 144 Stanford University 2011-09-29 Utz Laboratory, Stanford University Escherichia coli,Gallus gallus,Homo sapiens,Bos taurus,Oryctolagus cuniculus,Mus musculus
Escherichia coli,Gallus gallus,Homo sapiens,Bos taurus,Oryctolagus cuniculus,Mus musculus
Other spotted peptide or protein, Utz Lab Whole Protein Autoantigen Array V2.0,
17 GPL9059 Utz Lab Whole Protein Autoantigen Array V1.0 78 Stanford University 2009-08-19 Utz Laboratory, Stanford University Escherichia coli,Gallus gallus,Homo sapiens,Bos taurus,Oryctolagus cuniculus,Mus musculus
Escherichia coli,Gallus gallus,Homo sapiens,Bos taurus,Oryctolagus cuniculus,Mus musculus
Other spotted peptide or protein, Utz Lab Whole Protein Autoantigen Array V1.0,
18 GPL17752 Utz lab SLE antigen and serum factor microarray 1,350 Stanford University 2013-09-23 Laboratory of Paul J. Utz Gallus gallus,Homo sapiens,Bos taurus
Gallus gallus,Homo sapiens,Bos taurus
Other spotted peptide or protein, Utz lab SLE antigen and serum factor microarray,
19 GPL17754 Utz lab immunodeficiency antigen and serum factor microarray, number 2 282 Stanford University 2013-09-23 Laboratory of Paul J. Utz Gallus gallus,Homo sapiens,Bos taurus
Gallus gallus,Homo sapiens,Bos taurus
Other spotted peptide or protein, Utz lab immunodeficiency antigen and serum factor microarray, number 2,
20 GPL17753 Utz lab immunodeficiency antigen and serum factor microarray, number 1 282 Stanford University 2013-09-23 Laboratory of Paul J. Utz Gallus gallus,Homo sapiens,Bos taurus
Gallus gallus,Homo sapiens,Bos taurus
Other spotted peptide or protein, Utz lab immunodeficiency antigen and serum factor microarray, number 1,
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