Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(7)		   cDNA Array
(61)		   Oligo Array
(104)		   Bead Array
(4)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(57)		   Other
(1)		   All
(249)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Thyroid hormone induced changes in Xenopus laevis tadpole limb bud (GSE3404) [Oligo Array] Carnegie Xenopus Laevis 22K Microarray v1.0 (60-mer Oligo) (GPL2901) NIH 2005-10-03 Xenopus laevis,unidentified
Xenopus laevis,unidentified		 269,328
(22,444 x 12) 		12 by_platform
by_series
2 Thyroid hormone induced resorption of tail in Xenopus laevis tadpole (GSE3405) [Oligo Array] Carnegie Xenopus Laevis 22K Microarray v1.0 (60-mer Oligo) (GPL2901) NIH 2005-10-03 Xenopus laevis,unidentified
Xenopus laevis,unidentified		 269,328
(22,444 x 12) 		12 by_platform
by_series
3 Thyroid hormone induced changes in Xenopus laevis tadpole brain (GSE3402) [Oligo Array] Carnegie Xenopus Laevis 22K Microarray v1.0 (60-mer Oligo) (GPL2901) NIH 2005-10-03 Xenopus laevis,unidentified
Xenopus laevis,unidentified		 201,996
(22,444 x 9) 		9 by_platform
by_series
4 Analysis of ToxT regulon in Vibrio cholerae El Tor (GSE36373) [HT Sequencing] Helicos HeliScope (Vibrio cholerae O1 str. C6706) (GPL15332) Harvard Medical School 2012-03-08 Vibrio cholerae,unidentified
Vibrio cholerae,unidentified		 17
(0 x 17) 		17 by_platform
by_series
5 Analysis of ToxT regulon in Vibrio cholerae El Tor (GSE36373) [HT Sequencing] Illumina HiSeq 2000 (Vibrio cholerae O1 str. C6706) (GPL15333) Harvard Medical School 2012-03-08 Vibrio cholerae,unidentified
Vibrio cholerae,unidentified		 6
(0 x 6) 		6 by_platform
by_series
6 Hypertensive Study (GSE8585) [cDNA Array] Hypertension Microarray Platform (GPL5653) Thomas Jefferson University 2007-07-25 unidentified,Rattus norvegicus
unidentified,Rattus norvegicus		 721,920
(18,048 x 40) 		40 by_platform
by_series
7 Ethanol treated vs paired control (GSE2718) [cDNA Array] TJU-DBI Rat array v1 (GPL2000) Thomas Jefferson University 2005-05-27 unidentified,Rattus norvegicus
unidentified,Rattus norvegicus		 217,728
(18,144 x 12) 		12 by_platform
by_series
8 Microbial communities in the gut of the beetle Odontotaenius disjunctus (GSE40067) [GeneChip] [PhyloChip] Affymetrix G2 PhyloChip (GPL15537) University of California, Berkeley 2012-08-13 unidentified,metagenomes
unidentified,metagenomes		 139,856
(8,741 x 16) 		4 12 by_platform
by_series
9 Transcriptome-based characterization of the interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat co-cultures (GSE45623) [Oligo Array] Agilent TIFN Lactobacillus bulgaricus arrays, TB1_8, Version 1 (GPL16855) Arla Foods 2013-03-29 unidentified,Lactobacillus delbrueckii subsp. bulgaricus
unidentified,Lactobacillus delbrueckii subsp. bulgaricus		 29,532
(7,383 x 4) 		4 by_platform
by_series
10 HCMV infection of human neural precursor cells: HCMV expression (GSE31141) [Oligo Array] PHRI-UMNDJ Human cytomegalovirus 1.5K CAG_HCMV [gene-level] (GPL15366) Center for Applied Genomics 2011-08-02 unidentified,Human herpesvirus 5
unidentified,Human herpesvirus 5		 570
(285 x 2) 		2 by_platform
by_series
11 HCMV infection of human neural precursor cells (GSE31142) [Oligo Array] PHRI-UMNDJ Human cytomegalovirus 1.5K CAG_HCMV [gene-level] (GPL15366) Center for Applied Genomics 2011-08-02 unidentified,Human herpesvirus 5
unidentified,Human herpesvirus 5		 570
(285 x 2) 		2 by_platform
by_series
12 A unique herpesviral transcriptional program in KSHV-infected lymphatic endothelial cells leads to mTORC1 activation and rapamycin sensitivity (GSE45600) [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) Novartis Institutes for BioMedical Research 2013-03-28 unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 165,720
(13,810 x 12) 		4 8 by_platform
by_series
13 Mock and stably infected rKSHV.219 cells (LEC, BEC, HUVEC, and HAEC) [Expt2] (GSE45591) [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) Novartis Institutes for BioMedical Research 2013-03-28 unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 110,480
(13,810 x 8) 		4 4 by_platform
by_series
14 Mock and stably infected rKSHV.219 cells (LEC and BEC) [Expt1] (GSE45590) [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) Novartis Institutes for BioMedical Research 2013-03-28 unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 55,240
(13,810 x 4) 		4 by_platform
by_series
15 Influence of 17β-estradiol on Gene Expression of Paracoccidioides During Mycelia-to-Yeast Transition (GSE30466) [cDNA Array] Stanford University/Stevens Lab Paracoccidioides brasiliensis 12K v1.0 (GPL8371) Stanford University 2011-07-06 unidentified
unidentified		 940,652
(12,377 x 76) 		76 by_platform
by_series
16 Golden-mantled ground squirrel (Spermophilus lateralis) hibernating liver transcriptome (GSE2024) [cDNA Array] Spermophilus lateralis array Mk 1 (GPL1706) Stanford University 2004-11-29 unidentified
unidentified		 440,160
(12,576 x 35) 		35 by_platform
by_series
17 Golden-mantled ground squirrel (Spermophilus lateralis) hibernating heart transcriptome (GSE2023) [cDNA Array] Spermophilus lateralis array Mk 1 (GPL1706) Stanford University 2004-11-29 unidentified
unidentified		 377,280
(12,576 x 30) 		30 by_platform
by_series
18 Transcriptome Profiling of Xanthomonas oryzae pv. oryzae knockout mutants at different hybridization conditions and PMTs (GSE9643) [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) University of California, Davis 2007-11-19 unidentified
unidentified		 362,880
(10,080 x 36) 		36 by_platform
by_series
19 Golden-mantled ground squirrel (Spermophilus lateralis) hibernating brain transcriptome (GSE2022) [cDNA Array] Spermophilus lateralis array Mk 1 (GPL1706) Stanford University 2004-11-29 unidentified
unidentified		 301,824
(12,576 x 24) 		24 by_platform
by_series
20 Salmonella Typhimurium: Immobilized growth vs. Planktonic growth (GSE32995) [cDNA Array] SALSA 2 IFR Salmonella 8K Arrays (GPL13609) Technical University of Denmark 2011-10-14 unidentified
unidentified		 298,368
(8,064 x 37) 		37 by_platform
by_series
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