Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)
  Primates
(37)
  Rodents
(1,748)
  Mammals
(295)
  Vertebrates
(402)
  Invertebrates
(1,004)
  Plants
(2,170)
  Bacteria
(1,636)
  Viruses
(78)
  Phages
(8)
  Unclassified
(399)
  All
(11,528)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(35)
  Oligo Array
(221)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(399)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10879 Multi-species (Bovine, Mouse, Frog) oocyte 14k array 13,824 Université Laval 2010-09-03 Marc-André Sirard Laboratory (homemade) Xenopus laevis,Bos taurus,Mus musculus
Xenopus laevis,Bos taurus,Mus musculus
cDNA Array spotted DNA/cDNA, Multi-species (Bovine, Mouse, Frog) oocyte 14k array, Bos taurus (clones 1-1249), Mus musculus (clones 1250-2399), Xenopus Laevis (clones 2400-3552).
2 GPL6123 UCD_Ronald_XOarray_5K_V1.0 10,080 University of California, Davis 2007-11-13 Microarray Core Facility. University of California, Davis unidentified,Xanthomonas oryzae pv. oryzicola BLS256
unidentified,Xanthomonas oryzae pv. oryzicola BLS256
Oligo Array spotted oligonucleotide, UCD_Ronald_XOarray_5K_V1.0,
3 GPL6953 UCD_Ronald_XOarray_5K_V2.0 10,080 University of California, Davis 2008-06-11 ArrayCore Microarray Facility at University of California, Davis unidentified,Xanthomonas oryzae pv. oryzicola BLS256
unidentified,Xanthomonas oryzae pv. oryzicola BLS256
Oligo Array spotted oligonucleotide, UCD_Ronald_XOarray_5K_V2.0,
4 GPL4041 UAF Arctic Ground Squirrel Illumina BeadArray 1A 707 University of Alaska Fairbanks 2006-07-29 Illumina unidentified,Spermophilus tridecemlineatus
unidentified,Spermophilus tridecemlineatus
Bead Array oligonucleotide beads, UAF Arctic Ground Squirrel Illumina BeadArray 1A, This array (1A) contains the first 707 genes designed from the mixed sequences of three close-related ground squirrel species: golden-mantled ground squirrel; thirteen-lined ground squirrel; arctic ground squirrel. Two 50bps probes were designed for each gene.
5 GPL4042 UAF Arctic Ground Squirrel Illumina BeadArray 2A 707 University of Alaska Fairbanks 2006-07-29 Illumina unidentified,Spermophilus tridecemlineatus
unidentified,Spermophilus tridecemlineatus
Bead Array oligonucleotide beads, UAF Arctic Ground Squirrel Illumina BeadArray 2A, This array (2A) contains the second 707 genes designed from the mixed sequences of three close-related ground squirrel species: golden-mantled ground squirrel; thirteen-lined ground squirrel; arctic ground squirrel. Two 50bps probes were designed for each gene.
6 GPL9022 UON_Campylobacter oligo array v1 5,190 University of Nottingham 2009-08-12 University of Nottingham unidentified,Campylobacter jejuni RM1221,Campylobacter coli RM2228
unidentified,Campylobacter jejuni RM1221,Campylobacter coli RM2228
Oligo Array spotted oligonucleotide, UON_Campylobacter oligo array v1,
7 GPL15824 NimbleGen Custom Desulfovibrio alaskensis G20 Tiling [NimbleGen_G20_2082K_1] 2,005,818 Lawrence Berkeley Lab 2012-07-18 NimbleGen unidentified
unidentified
Tiling Array in situ oligonucleotide, NimbleGen Custom Desulfovibrio alaskensis G20 Tiling [NimbleGen_G20_2082K_1], NC_007519 100318_DdesG20_JK_EXP_HX1.ndf
8 GPL15092 Agilent-031544 Custom Plasmodium berghei str. ANKA array [PBANKA1] 45,220 mie university 2012-01-05 Agilent Technologies unidentified
unidentified
Oligo Array in situ oligonucleotide, Agilent-031544 Custom Plasmodium berghei str. ANKA array [PBANKA1], Arrays of this design have barcodes that begin with 16031544 or 2531544. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
9 GPL7621 JCVI Pseudomonas fluorescens Pf-5 28k v2.0 27,648 Macquarie University 2008-11-10 J. Craig Venter Institute unidentified
unidentified
Oligo Array mixed spotted oligonucleotide/cDNA, JCVI Pseudomonas fluorescens Pf-5 28k v2.0,
10 GPL7620 JCVI Pseudomonas fluorescens Pf-5 23k v1.0 23,232 Macquarie University 2008-11-10 J. Craig Venter Institute unidentified
unidentified
Oligo Array mixed spotted oligonucleotide/cDNA, JCVI Pseudomonas fluorescens Pf-5 23k v1.0,
11 GPL13705 Glomus intraradices EST expression array 22,404 INRA 2011-06-09 Roche NimbleGen unidentified
unidentified
MIXTURE in situ oligonucleotide, Glomus intraradices EST expression array, This is a condensed platform of the full array which has probes designed from a robust set of non-redundant virtual transcripts (NRVT) (25,906, ~20Mb) transcribed in quiescent and germinated spores, extraradical mycelium (ERM) and symbiotic roots of Glomus intraradices produced by Sanger- and 454-sequencing. The G. intraradices EST expression array (4 x 72K) manufactured by Roche NimbleGen Systems Limited (Madison, WI) contained three independent, non identical, 60-mer probes per sequence. Included in the oligoarray were 22,402 G. intraradices non-redundant transcripts, 5785 random 60-mer control probes and labeling controls.
12 GPL14357 NimbleGen Eucalyptus 386K array v.1.0. 21,413 Universidade Federal do Rio Grande do Sul 2011-08-27 NimbleGen unidentified
unidentified
Oligo Array in situ oligonucleotide, NimbleGen Eucalyptus 386K array v.1.0., NimbleGen design name 2006-02-21_Eucalyptus_50mer, NimbleGen design ID 3112, NimbleGen Order ID 3369. Standard expression design for 21,442 ESTs from Eucalyptus spp. with nine 50-mer probes per EST. Each probe replicated 2 times on chip (2 blocks per chip).
13 GPL6253 JCVI PFGRC Plasmodium Sal-1 18K v1 array designed primarily based on strain Sal-1 17,218 J. Craig Venter Institute 2007-12-06 JCVI PFGRC unidentified
unidentified
Oligo Array spotted oligonucleotide, JCVI PFGRC Plasmodium Sal-1 18K v1 array designed primarily based on strain Sal-1, This set includes 16120 oligonucleotides, has 18240 spots distributed in 48 blocks.
14 GPL14692 Agilent_028085 Ketogulonigenium vulgare custom microarray [Feature Number version] 15,744 Arraystar Inc. 2011-10-10 Agilent Technologies unidentified
unidentified
Oligo Array in situ oligonucleotide, Agilent_028085 Ketogulonigenium vulgare custom microarray [Feature Number version], The Ketogulonigenium vulgarum WSH-001 custom Microarray is a broad view that represents well-known and predicted Ketogulonigenium vulgarum WSH-001 genes and transcripts. Coupled with NCBI’s gene prediction processes and Agilent's probe selection, this design delivers increased data quality and less gene coverage redundancy. Design ID : 028085 ***A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL14693.
15 GPL15077 Agilent-031546 PBANKA1_X8 15,744 mie university 2012-01-03 Agilent Technologies unidentified
unidentified
Oligo Array in situ oligonucleotide, Agilent-031546 PBANKA1_X8, Arrays of this design have barcodes that begin with 16031546 or 2531546. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
16 GPL15478 University of Illinois/Haifa University Spalax galili Agilent 8x15K microarray 15,257 University of Illinois 2012-04-20 Agilent unidentified
unidentified
Oligo Array in situ oligonucleotide, University of Illinois/Haifa University Spalax galili Agilent 8x15K microarray, Spalax galili 8 x 15K oligo microarray
17 GPL9678 RUGMCB Pichia angusta 8x15K v1 13,032 University of Groningen 2009-11-16 Agilent Technologies unidentified
unidentified
Oligo Array in situ oligonucleotide, RUGMCB Pichia angusta 8x15K v1,
18 GPL1706 Spermophilus lateralis array Mk 1 12,576 Stanford University 2004-11-14 unidentified
unidentified
cDNA Array spotted DNA/cDNA, Spermophilus lateralis array Mk 1, cDNA array for the Golden-mantled ground squirrel (Spermophilus lateralis) Keywords = Spermophilus Keywords = squirrel Keywords = hibernation Keywords = torpor
19 GPL15674 Urocitellus parryii 9.6k 9,600 CAS-MPG partner institute for computational biology 2012-06-07 Wistar Institute unidentified
unidentified
cDNA Array spotted DNA/cDNA, Urocitellus parryii 9.6k,
20 GPL9010 JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain KIM 8,141 J. Craig Venter Institute 2009-08-10 JCVI PFGRC unidentified
unidentified
Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain KIM, This set includes 7359 oligonucleotides, has 18240 spots distributed in 48 blocks.
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