Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(7)		   cDNA Array
(61)		   Oligo Array
(104)		   Bead Array
(4)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(57)		   Other
(1)		   All
(249)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 High-throughput sequencing of small RNAs from Caenorhabditis elegans (GSE5990) [HT Sequencing] 454 GS (Caenorhabditis elegans; Escherichia coli) (GPL11099) Whitehead Institute for Biomedical Research and MIT 2006-10-07 Escherichia coli,Caenorhabditis elegans
Escherichia coli,Caenorhabditis elegans		 1
(0 x 1) 		1 by_platform
by_series
2 Ebola-infected non-human primates - PBMCs (GSE8317) [cDNA Array] LC-44 (GPL5447) Whitehead Institute for Biomedical Research 2007-06-27 Homo sapiens,Macaca fascicularis
Homo sapiens,Macaca fascicularis		 2,446,080
(37,632 x 65) 		65 by_platform
by_series
3 RNAi in budding yeast (GSE17872) [HT Sequencing] Illumina Genome Analyzer (Naumovozyma castellii) (GPL15027) Whitehead Institute for Biomedical Research 2009-08-28 unidentified
unidentified		 11
(0 x 11) 		11 by_platform
by_series
4 The impact of RNAi on the Saccharomyces castellii transcriptome (GSE17870) [HT Sequencing] Illumina Genome Analyzer (Naumovozyma castellii) (GPL15027) Whitehead Institute for Biomedical Research 2009-08-28 unidentified
unidentified		 6
(0 x 6) 		6 by_platform
by_series
5 Small RNAs in budding yeast (GSE17871) [HT Sequencing] Illumina Genome Analyzer (Naumovozyma castellii) (GPL15027) Whitehead Institute for Biomedical Research 2009-08-28 unidentified
unidentified		 5
(0 x 5) 		5 by_platform
by_series
6 Degradome sequencing from S. castellii (GSE37723) [HT Sequencing] Illumina Genome Analyzer (Naumovozyma castellii) (GPL15027) Whitehead Institute for Biomedical Research 2012-05-02 unidentified
unidentified		 2
(0 x 2) 		2 by_platform
by_series
7 Structure of yeast Argonaute with guide RNA (GSE37725) [HT Sequencing] Illumina Genome Analyzer (Naumovozyma castellii) (GPL15027) Whitehead Institute for Biomedical Research 2012-05-02 unidentified
unidentified		 2
(0 x 2) 		2 by_platform
by_series
8 Predicting a human gut microbiota's response to diet in gnotobiotic mice. (GSE26687) [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) Washington University in St. Louis 2011-01-18 unidentified
unidentified		 490
(0 x 490) 		490 by_platform
by_series
9 The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (RNA-Seq) (GSE31670) [HT Sequencing] Illumina Genome Analyzer IIx (Bacteroides; Bifidobacterium animalis subsp. lactis CNCM I-2494; Clostridia; Collinsella; Lactobacillus; Parabacteroides; Ruminococcus; Streptococcus thermophilus) (GPL14349) Washington University 2011-08-25 unidentified
unidentified		 40
(0 x 40) 		10 30 by_platform
by_series
10 The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (RNA-Seq) (GSE31670) [HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494; Lactobacillus delbrueckii subsp. bulgaricus; Lactococcus lactis subsp. cremoris CNCM I-1631; Streptococcus thermophilus CNCM I-1630) (GPL14350) Washington University 2011-08-25 unidentified
unidentified		 6
(0 x 6) 		6 by_platform
by_series
11 The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (RNA-Seq) (GSE31670) [HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494) (GPL14231) Washington University 2011-08-25 unidentified
unidentified		 4
(0 x 4) 		4 by_platform
by_series
12 Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS (GSE38633) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 331,776
(27,648 x 12) 		12 by_platform
by_series
13 The GacA transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces (GSE38630) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 165,888
(27,648 x 6) 		6 by_platform
by_series
14 The rpoS transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces (GSE38631) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 165,888
(27,648 x 6) 		6 by_platform
by_series
15 The rpoS transcriptome of Pseudomonas protegens Pf-5 grown in rich medium (GSE38632) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 139,392
(23,232 x 6) 		6 by_platform
by_series
16 Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS (GSE38633) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) USDA-ARS 2012-06-11 Pseudomonas,unidentified
Pseudomonas,unidentified		 139,392
(23,232 x 6) 		6 by_platform
by_series
17 Linkage of genomic biomarkers to whole organism endpoints in a Toxicity Identification Evaluation (TIE) (GSE41463) [Oligo Array] Agilent-020996 USEPA Ampelisca abdita 8 x15k 60mer v1.0 (G2509F) (GPL16161) US Environmental Protection Agency 2012-10-10 Ampelisca,unidentified
Ampelisca,unidentified		 1,110,001
(7,351 x 151) 		3 148 by_platform
by_series
18 Development of a xenograft model for clinical oligo- and poly-metastatic progression (GSE29890) [Oligo Array] Human-mouse dual-species array HomoMus_v2 (GPL10749) universty of Chicago 2011-06-10 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 742,816
(92,852 x 8) 		8 by_platform
by_series
19 The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111 (GSE41244) [HT Sequencing] Illumina HiSeq 2000 (Burkholderia cenocepacia H111) (GPL16128) university of zürich 2012-10-01 Burkholderia,unidentified
Burkholderia,unidentified		 3
(0 x 3) 		3 by_platform
by_series
20 Metatranscriptomic array analysis of “Candidatus Accumulibacter phosphatis”-enriched EBPR Sludge (GSE17857) [Oligo Array] UW CombiMatrix Candidatus Accumulibacter phosphatis 12.5K (GPL9108) University of Wisconsin-Madison 2009-08-28 uncultured bacterium,Candidatus Accumulibacter phosphatis
uncultured bacterium,Candidatus Accumulibacter phosphatis		 75,264
(12,544 x 6) 		6 by_platform
by_series
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