Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(23)
  Tiling Array
(11)
  cDNA Array
(71)
  Oligo Array
(177)
  Bead Array
(4)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(122)
  Other
(23)
  All
(433)
 
1   |   2   |   3   |   4   |   5      »      [22]
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Transcriptome analysis of rice pathogen Acidovorax avenae subsp. avenae cultivated in vitro, in vivo and in co-culture with the rice rhizobacterium Burkholderia seminalis (GSE50522) [HT Sequencing] Illumina HiSeq 2000 (Acidovorax avenae subsp. avenae RS-1) (GPL17669) Zhejiang University 2013-09-02 Acidovorax avenae,unidentified
Acidovorax avenae,unidentified
6
(0 x 6)
6 by_platform
by_series
2 High-throughput sequencing of small RNAs from Caenorhabditis elegans (GSE5990) [HT Sequencing] 454 GS (Caenorhabditis elegans; Escherichia coli) (GPL11099) Whitehead Institute for Biomedical Research and MIT 2006-10-07 Escherichia coli,Caenorhabditis elegans
Escherichia coli,Caenorhabditis elegans
1
(0 x 1)
1 by_platform
by_series
3 Ebola-infected non-human primates - PBMCs (GSE8317) [cDNA Array] LC-44 (GPL5447) Whitehead Institute for Biomedical Research 2007-06-27 Homo sapiens,Macaca fascicularis
Homo sapiens,Macaca fascicularis
2,446,080
(37,632 x 65)
65 by_platform
by_series
4 The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (RNA-Seq) (GSE31670) [HT Sequencing] Illumina Genome Analyzer IIx (Bacteroides; Bifidobacterium animalis subsp. lactis CNCM I-2494; Clostridia; Collinsella; Lactobacillus; Parabacteroides; Ruminococcus; Streptococcus thermophilus) (GPL14349) Washington University School of Medicine 2011-08-25 unidentified
unidentified
40
(0 x 40)
10 30 by_platform
by_series
5 The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (RNA-Seq) (GSE31670) [HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494; Lactobacillus delbrueckii subsp. bulgaricus; Lactococcus lactis subsp. cremoris CNCM I-1631; Streptococcus thermophilus CNCM I-1630) (GPL14350) Washington University School of Medicine 2011-08-25 unidentified
unidentified
6
(0 x 6)
6 by_platform
by_series
6 The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (RNA-Seq) (GSE31670) [HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494) (GPL14231) Washington University School of Medicine 2011-08-25 unidentified
unidentified
4
(0 x 4)
4 by_platform
by_series
7 Predicting a human gut microbiota's response to diet in gnotobiotic mice. (GSE26687) [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) Washington University in St. Louis 2011-01-18 unidentified
unidentified
490
(0 x 490)
490 by_platform
by_series
8 The metabolic niche of a prominent sulfate-reducing human gut bacterium (GSE48809) [HT Sequencing] Illumina Genome Analyzer IIx (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17383) Washington University 2013-07-11 unidentified
unidentified
75
(0 x 75)
5 8 62 by_platform
by_series
9 The metabolic niche of a prominent sulfate-reducing human gut bacterium [2] (GSE48807) [HT Sequencing] Illumina Genome Analyzer IIx (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17383) Washington University 2013-07-11 unidentified
unidentified
62
(0 x 62)
62 by_platform
by_series
10 The metabolic niche of a prominent sulfate-reducing human gut bacterium [2] (GSE48807) [HT Sequencing] Illumina MiSeq (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17433) Washington University 2013-07-11 unidentified
unidentified
22
(0 x 22)
22 by_platform
by_series
11 The metabolic niche of a prominent sulfate-reducing human gut bacterium (GSE48809) [HT Sequencing] Illumina MiSeq (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17433) Washington University 2013-07-11 unidentified
unidentified
22
(0 x 22)
22 by_platform
by_series
12 The metabolic niche of a prominent sulfate-reducing human gut bacterium [2] (GSE48807) [HT Sequencing] Illumina MiSeq (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17434) Washington University 2013-07-11 unidentified
unidentified
17
(0 x 17)
17 by_platform
by_series
13 The metabolic niche of a prominent sulfate-reducing human gut bacterium (GSE48809) [HT Sequencing] Illumina MiSeq (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17434) Washington University 2013-07-11 unidentified
unidentified
17
(0 x 17)
17 by_platform
by_series
14 The metabolic niche of a prominent sulfate-reducing human gut bacterium [1] (GSE48409) [HT Sequencing] Illumina Genome Analyzer IIx (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17383) Washington University 2013-06-28 unidentified
unidentified
13
(0 x 13)
5 8 by_platform
by_series
15 The metabolic niche of a prominent sulfate-reducing human gut bacterium [2] (GSE48807) [HT Sequencing] Illumina Genome Analyzer II (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17435) Washington University 2013-07-11 unidentified
unidentified
9
(0 x 9)
9 by_platform
by_series
16 The metabolic niche of a prominent sulfate-reducing human gut bacterium (GSE48809) [HT Sequencing] Illumina Genome Analyzer II (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17435) Washington University 2013-07-11 unidentified
unidentified
9
(0 x 9)
9 by_platform
by_series
17 The metabolic niche of a prominent sulfate-reducing human gut bacterium [2] (GSE48807) [HT Sequencing] Illumina HiSeq 2000 (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17431) Washington University 2013-07-11 unidentified
unidentified
2
(0 x 2)
2 by_platform
by_series
18 The metabolic niche of a prominent sulfate-reducing human gut bacterium [2] (GSE48807) [HT Sequencing] Illumina HiSeq 2000 (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17432) Washington University 2013-07-11 unidentified
unidentified
2
(0 x 2)
2 by_platform
by_series
19 The metabolic niche of a prominent sulfate-reducing human gut bacterium (GSE48809) [HT Sequencing] Illumina HiSeq 2000 (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17431) Washington University 2013-07-11 unidentified
unidentified
2
(0 x 2)
2 by_platform
by_series
20 The metabolic niche of a prominent sulfate-reducing human gut bacterium (GSE48809) [HT Sequencing] Illumina HiSeq 2000 (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469) (GPL17432) Washington University 2013-07-11 unidentified
unidentified
2
(0 x 2)
2 by_platform
by_series
1   |   2   |   3   |   4   |   5      »      [22]