Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Unclassified
(430)

All
(11,831)

SAGE NlaIII
(1)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(4)

HT-Seq
(102)

Other
(40)

All
(430)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL980	15 K cDNA	17,280	U.T. Southwestern Medical Center	2004-02-10		Homo sapiens,Mus musculus	cDNA Array	spotted DNA/cDNA, 15 K cDNA, Mouse and human 15,000 gene cDNA array
2	GPL3032	16S and 23S rRNA CodeLink Microarray	202	Catholic University of Louvain	2005-10-28	University of Washington, Seattle, Civil and Environmental Engineering	unidentified	Oligo Array	spotted oligonucleotide, 16S and 23S rRNA CodeLink Microarray, Probes targeting the 16S and 23S rRNA of various microorganisms (mainly Bacteria).
3	GPL2993	16S and 23S rRNA Gel Pad Microarray	270	Catholic University of Louvain	2005-10-20	Argonne National Laboratory	unidentified	Oligo Array	spotted oligonucleotide, 16S and 23S rRNA Gel Pad Microarray, Probes targeting the 16S and 23S rRNA of various organisms (mainly Bacteria)
4	GPL6461	2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus	23,797	Mayo Clinic	2008-02-05		Homo sapiens,Bos taurus,Vaccinia virus	Other	MS, 2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus, B-cell cultures were infected with live vaccinia virus (NYBOH strain). Cells were lysed, HLA/peptide complexes were enriched by immunoaffinity (W6/32 mAb), peptides were released with acid and separated from HLA proteins by 10 kDa ultrafilitration. HLA class I peptides were separated and identified by 2-dimensional liquid chromatography and tandem mass spectrometry to identify class I peptides derived from vaccinia proteins, that were being presented to the immune system.
5	GPL11099	454 GS (Caenorhabditis elegans; Escherichia coli)	0		2010-10-22		Escherichia coli,Caenorhabditis elegans	HT Sequencing	high-throughput sequencing, 454 GS (Caenorhabditis elegans; Escherichia coli),
6	GPL15026	454 GS (Cymbidium ringspot virus; Nicotiana benthamiana)	0		2011-12-19		Nicotiana benthamiana,Cymbidium ringspot virus	HT Sequencing	high-throughput sequencing, 454 GS (Cymbidium ringspot virus; Nicotiana benthamiana),
7	GPL15201	454 GS FLX (Aliivibrio fischeri; environmental samples)	0		2012-02-08		Aliivibrio fischeri,	HT Sequencing	high-throughput sequencing, 454 GS FLX (Aliivibrio fischeri; environmental samples),
8	GPL15200	454 GS FLX (environmental samples)	0		2012-02-08			HT Sequencing	high-throughput sequencing, 454 GS FLX (environmental samples),
9	GPL11212	454 GS FLX (unidentified)	0		2010-11-15		unidentified	HT Sequencing	high-throughput sequencing, 454 GS FLX (unidentified),
10	GPL6012	A genome proxy array for profiling marine micobial communities	428	University of Arizona	2007-10-15	DeLong Lab	uncultured crenarchaeote 4B7,Prochlorococcus marinus subsp. pastoris str. CCMP1986,uncultured marine alpha proteobacterium,uncultured marine gamma proteobacterium EBAC31A08,uncultured marine group II euryarchaeote 37F11,uncultured proteobacterium,uncultur	Oligo Array	spotted oligonucleotide, A genome proxy array for profiling marine micobial communities, *Design Overview* The prototype microarray targeted thirteen BAC or fosmid genome fragments (20-160kb) from both bacteria and archaea (Table 1), recovered from a variety of marine habitats (Table 2), as well as the cyanobacterium Prochlorococcus MED4. These clones were originally sequenced because of the presence of taxonomic marker or specific functional genes. This array consisted of sets of 70-bp oligonucleotides targeting each genome or genome fragment (Fig. 1), dispersed along the target sequences with no more than one probe per gene, and excluding rRNA genes as targets. The probes were selected solely based on theoretical thermodynamic properties and GC content (~40%); that is, probe selection did not focus on specific genes or regions, but simply produced the Ã¢â‚¬Å“optimalÃ¢â‚¬Â probes for each genome proxy based on the probesÃ¢â‚¬â„¢ predicted hybridization properties. rRNA genes were excluded, because this probe design approach, which avoids sequence alignments and considerations of RNA secondary structure, would be unlikely to result in useful rRNA probes. Furthermore, rRNA probes of traditional design could not be included on the array because their appropriate hybridization conditions would be very different from those of this arrayÃ¢â‚¬â„¢s probes.
11	GPL16418	AB 5500xl Genetic Analyzer (Pseudomonas chlororaphis subsp. aureofaciens 30-84)	0		2012-12-20		unidentified	HT Sequencing	high-throughput sequencing, AB 5500xl Genetic Analyzer (Pseudomonas chlororaphis subsp. aureofaciens 30-84),
12	GPL15993	AB SOLiD 4 System (Trichophytom rubrum)	0		2012-08-28		unidentified	HT Sequencing	high-throughput sequencing, AB SOLiD 4 System (Trichophytom rubrum),
13	GPL11652	AbC_ELTE_human_432_v1	432	EÃƒÂ¶tvÃƒÂ¶s LorÃƒÂ¡nd University	2011-01-26	Eotvos Lorand University, Budapest, Hungary	Homo sapiens,Sus scrofa,Bos taurus,Capra hircus,Oryctolagus cuniculus	Other	spotted peptide or protein, AbC_ELTE_human_432_v1,
14	GPL7563	ACGT Pearl Millet SSH library 4K v1.0	4,224	CSIR Biosciences	2008-11-05	ACGT Microarray Facility, University of Pretoria, Pretoria, South Africa (http://www.microarray.up.ac.za )	unidentified	cDNA Array	spotted DNA/cDNA, ACGT Pearl Millet SSH library 4K v1.0,
15	GPL2889	Acyrthosiphon pisum + Buchnera aphidicola dual genome array	1,904	University of Arizona	2005-09-26	GATC - University of Arizona	Buchnera aphidicola,Acyrthosiphon pisum	cDNA Array	spotted DNA/cDNA, Acyrthosiphon pisum + Buchnera aphidicola dual genome array, Dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola The platform table is condensed to show each GENE on the array. The full array table, showing all spots, is linked as a supplementary file (see download link below).
16	GPL9472	Adelaide microarray facility Exiqon LNA miRNA microarray_version8.1	3,072	SA Pathology	2009-10-21	Adelaide Microarray Facility	Arabidopsis thaliana,Saccharomyces cerevisiae,Caenorhabditis elegans,Drosophila melanogaster,Gallus gallus,Macaca mulatta,Homo sapiens,Bos taurus,Mus musculus,Rattus norvegicus	Oligo Array	spotted oligonucleotide, Adelaide microarray facility Exiqon LNA miRNA microarray_version8.1, The actual (physical) array contains duplicate spots, 1487 x 2 + empty -> 3072 spots
17	GPL4335	Affymetrix custom made array SFORV2_2	10,098	University of Chicago	2006-09-15	Affymetrix	Pan troglodytes,Homo sapiens,Canis lupus familiaris,Rattus norvegicus	GeneChip	in situ oligonucleotide, Affymetrix custom made array SFORV2_2,
18	GPL10501	Agilent Custom Gene Expression Array for Saccharomyces castellii	5,688	MIT	2010-06-08	Agilent	unidentified	Oligo Array	in situ oligonucleotide, Agilent Custom Gene Expression Array for Saccharomyces castellii, Agilent Custom Oligo Microarray 8x15K G4427A
19	GPL11330	Agilent custom Leishmania microarray v2	9,709	UniversitÃƒÂ© Laval	2010-12-17	Agilent		Oligo Array	in situ oligonucleotide, Agilent custom Leishmania microarray v2, Multispecies Leishmania microarray
20	GPL15030	Agilent Human, KSHV, and EBV 44K AMADID #027774	14,601	University of Pittsburgh	2011-12-19	Agilent Technologies	Homo sapiens,Human herpesvirus 4,Human herpesvirus 8	Oligo Array	in situ oligonucleotide, Agilent Human, KSHV, and EBV 44K AMADID #027774,

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