Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,625)		   Primates
(206)		   Rodents
(12,612)		   Mammals
(782)		   Vertebrates
(1,156)		   Invertebrates
(4,045)		   Plants
(6,642)		   Bacteria
(2,980)		   Viruses
(50)		   Phages
(4)		   Unclassified
(287)		   All
(47,440)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(9)		   cDNA Array
(61)		   Oligo Array
(113)		   Bead Array
(4)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(62)		   Other
(23)		   All
(287)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Whole-genome transcriptional profiles of SGIV both in vitro and in vivo (GSE7151) [cDNA Array] Singapore Grouper Iridovirus 0.5K genomic DNA microarray (GPL4893) Sun yet-san university 2007-02-27 Epinephelus tauvina,Iridovirus
Epinephelus tauvina,Iridovirus		 12,672
(576 x 22) 		9 13 by_platform
by_series
2 Warming-induced shifts in Antarctic soil microorganisms disrupt soil functioning (GSE22825) [Oligo Array] UOklahoma_GeoChip_2.0 (GPL10646) NRC-BRI 2010-07-08 environmental samples,prokaryotic environmental samples
environmental samples,prokaryotic environmental samples		 96,334
(1,966 x 49) 		1 48 by_platform
by_series
3 Virus-derived siRNAs in Arabidopsis thaliana (GSE19965) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana; Cucumber mosaic virus (strain FNY)) (GPL9951) UC Riverside 2010-01-20 unidentified
unidentified		 6
(0 x 6) 		6 by_platform
by_series
4 Verification of immunogenic nature by microarray screening (GSE45520) [Other] IBMT Campylobacter jejuni NCTC 11168 full-length 22 immunogenicity (1 of 3) (GPL16880) Fraunhofer Institute for Biomedical Engineering 2013-03-26 Campylobacter jejuni subsp. jejuni,unidentified
Campylobacter jejuni subsp. jejuni,unidentified		 2,916
(729 x 4) 		4 by_platform
by_series
5 Verification of immunogenic nature by microarray screening (GSE45520) [Other] IBMT Campylobacter jejuni NCTC 11168 full-length 22 immunogenicity (2 of 3) (GPL16881) Fraunhofer Institute for Biomedical Engineering 2013-03-26 Campylobacter jejuni subsp. jejuni,unidentified
Campylobacter jejuni subsp. jejuni,unidentified		 1,200
(100 x 12) 		12 by_platform
by_series
6 Verification of immunogenic nature by microarray screening (GSE45520) [Other] IBMT Campylobacter jejuni NCTC 11168 full-length 22 immunogenicity (3 of 3) (GPL16882) Fraunhofer Institute for Biomedical Engineering 2013-03-26 Campylobacter jejuni subsp. jejuni,unidentified
Campylobacter jejuni subsp. jejuni,unidentified		 1,200
(100 x 12) 		12 by_platform
by_series
7 Variation in the Genomic islands of porcine enteropathogenic E. coli strains of serogroup O45 revealed by CGH and PCR. (GSE17036) [Oligo Array] MWG E. coli O157 (GPL533) Public Health Agency of Canada 2009-07-10 Escherichia coli O157:H7,unidentified
Escherichia coli O157:H7,unidentified		 76,032
(6,336 x 12) 		12 by_platform
by_series
8 Transcriptomic characterization of a virulence-deficient phosphatidylcholine-negative Agrobacterium tumefaciens mutant (GSE21223) [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) Ruhr-Universität Bochum 2010-04-06 unidentified
unidentified		 64,128
(5,344 x 12) 		12 by_platform
by_series
9 Transcriptomic analysis of copper tolerance and wood decay in the brown rot fungus Fibroporia radiculosa (GSE35333) [HT Sequencing] Illumina Genome Analyzer IIx (Fibroporia radiculosa TFFH 294) (GPL15161) Mississippi State University 2012-01-25 Fibroporia radiculosa,unidentified
Fibroporia radiculosa,unidentified		 7
(0 x 7) 		7 by_platform
by_series
10 Transcriptome-based characterization of the interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat co-cultures (GSE45623) [Oligo Array] Agilent TIFN Lactobacillus bulgaricus arrays, TB1_8, Version 1 (GPL16855) Arla Foods 2013-03-29 unidentified,Lactobacillus delbrueckii subsp. bulgaricus
unidentified,Lactobacillus delbrueckii subsp. bulgaricus		 29,532
(7,383 x 4) 		4 by_platform
by_series
11 Transcriptome Profiling of Zymomonas mobilis under furfural stress (GSE37848) [Oligo Array] NimbleGen_BIOMA_Zymomonas mobilis_array [DesignID 549081] (GPL15541) Biogas Institute of Ministry of Agriculture 2012-05-08 Zymomonas mobilis subsp. mobilis,unidentified
Zymomonas mobilis subsp. mobilis,unidentified		 11,610
(1,935 x 6) 		6 by_platform
by_series
12 Transcriptome Profiling of Xanthomonas oryzae pv. oryzae knockout mutants at different hybridization conditions and PMTs (GSE9643) [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) University of California, Davis 2007-11-19 unidentified
unidentified		 362,880
(10,080 x 36) 		36 by_platform
by_series
13 Transcriptome inheritance of a citrus somatic hybrid (GSE18386) [cDNA Array] Citrus 22k cDNA microarray v1 (GPL8769) Instituto Valenciano de Investigaciones Agrarias (IVIA) 2009-10-02 Citrus limon,unidentified
Citrus limon,unidentified		 199,584
(22,176 x 9) 		6 3 by_platform
by_series
14 Transcriptome and methylome interactions in rice hybrids (GSE38480) [HT Sequencing] Illumina Genome Analyzer II (Oryza sativa Japonica Group x Oryza sativa Indica Group) (GPL15664) University of Delaware 2012-06-05 Oryza sativa Japonica Group,unidentified
Oryza sativa Japonica Group,unidentified		 3
(0 x 3) 		3 by_platform
by_series
15 Transcriptome and methylome interactions in rice hybrids (GSE38480) [HT Sequencing] Illumina Genome Analyzer II (Oryza sativa Indica Group x Oryza sativa Japonica Group) (GPL15665) University of Delaware 2012-06-05 Oryza sativa Indica Group,unidentified
Oryza sativa Indica Group,unidentified		 3
(0 x 3) 		3 by_platform
by_series
16 Transcriptome analysis of pancreatic tumor cell invasion and angiogenesis in the PDAC-CAM model (GSE14509) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) University Bordeaux 1 2009-01-22 Gallus gallus,Homo sapiens
Gallus gallus,Homo sapiens		 109,350
(54,675 x 2) 		2 by_platform
by_series
17 Transcriptome analysis of pancreatic tumor cell invasion and angiogenesis in the PDAC-CAM model (GSE14509) [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) University Bordeaux 1 2009-01-22 Gallus gallus,Homo sapiens
Gallus gallus,Homo sapiens		 77,070
(38,535 x 2) 		2 by_platform
by_series
18 Transciptome analysis of Salmonella enterica serovar Typhimurium UK1 delta-raoN at oxidative stress (GSE37626) [Oligo Array] Nimblegen Salmonella Typhimurium LT2 4.5K [081014_Styp_LT2_EXP] (GPL15054) Korea University 2012-04-27 unidentified
unidentified		 18,016
(4,504 x 4) 		4 by_platform
by_series
19 Thyroid hormone induced resorption of tail in Xenopus laevis tadpole (GSE3405) [Oligo Array] Carnegie Xenopus Laevis 22K Microarray v1.0 (60-mer Oligo) (GPL2901) NIH 2005-10-03 Xenopus laevis,unidentified
Xenopus laevis,unidentified		 269,328
(22,444 x 12) 		12 by_platform
by_series
20 Thyroid hormone induced changes in Xenopus laevis tadpole limb bud (GSE3404) [Oligo Array] Carnegie Xenopus Laevis 22K Microarray v1.0 (60-mer Oligo) (GPL2901) NIH 2005-10-03 Xenopus laevis,unidentified
Xenopus laevis,unidentified		 269,328
(22,444 x 12) 		12 by_platform
by_series
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